Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QRA13_RS18830 Genome accession   NZ_CP128184
Coordinates   3824497..3825249 (+) Length   250 a.a.
NCBI ID   WP_130570744.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3819497..3830249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS18815 (QRA13_18815) - 3819720..3819911 (-) 192 WP_003152639.1 hypothetical protein -
  QRA13_RS18820 (QRA13_18820) - 3820364..3823006 (+) 2643 WP_020956152.1 valine--tRNA ligase -
  QRA13_RS18825 (QRA13_18825) - 3823065..3824357 (+) 1293 WP_224223714.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QRA13_RS18830 (QRA13_18830) comC 3824497..3825249 (+) 753 WP_130570744.1 A24 family peptidase Machinery gene
  QRA13_RS18835 (QRA13_18835) - 3825376..3826377 (+) 1002 WP_224223713.1 SPOR domain-containing protein -
  QRA13_RS18840 (QRA13_18840) - 3826518..3827087 (+) 570 WP_012118105.1 Maf family protein -
  QRA13_RS18845 (QRA13_18845) radC 3827119..3827814 (+) 696 WP_007408165.1 DNA repair protein RadC -
  QRA13_RS18850 (QRA13_18850) mreB 3827906..3828919 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  QRA13_RS18855 (QRA13_18855) mreC 3828950..3829813 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27233.97 Da        Isoelectric Point: 9.4293

>NTDB_id=846532 QRA13_RS18830 WP_130570744.1 3824497..3825249(+) (comC) [Bacillus velezensis strain YJ0-1 isolate soil]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=846532 QRA13_RS18830 WP_130570744.1 3824497..3825249(+) (comC) [Bacillus velezensis strain YJ0-1 isolate soil]
GTGCTTTTGATTCTGTTTTTTCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGACACGTGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGCATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58