Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QRA13_RS12290 Genome accession   NZ_CP128184
Coordinates   2537975..2539087 (-) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2532975..2544087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS12275 (QRA13_12275) gyrA 2533064..2535523 (-) 2460 WP_224223958.1 DNA gyrase subunit A -
  QRA13_RS12280 (QRA13_12280) gyrB 2535739..2537655 (-) 1917 WP_224224367.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QRA13_RS12285 (QRA13_12285) - 2537712..2537957 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  QRA13_RS12290 (QRA13_12290) recF 2537975..2539087 (-) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  QRA13_RS12295 (QRA13_12295) rlbA 2539103..2539318 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  QRA13_RS12300 (QRA13_12300) dnaN 2539453..2540589 (-) 1137 WP_044802262.1 DNA polymerase III subunit beta -
  QRA13_RS12305 (QRA13_12305) dnaA 2540774..2542114 (-) 1341 WP_007409908.1 chromosomal replication initiator protein DnaA -
  QRA13_RS12310 (QRA13_12310) rpmH 2542735..2542869 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  QRA13_RS12315 (QRA13_12315) rnpA 2543024..2543374 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=846511 QRA13_RS12290 WP_007409910.1 2537975..2539087(-) (recF) [Bacillus velezensis strain YJ0-1 isolate soil]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=846511 QRA13_RS12290 WP_007409910.1 2537975..2539087(-) (recF) [Bacillus velezensis strain YJ0-1 isolate soil]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAGTCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGTAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCACAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943