Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRA13_RS12060 Genome accession   NZ_CP128184
Coordinates   2496277..2496567 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2491277..2501567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS12045 (QRA13_12045) - 2491498..2492823 (-) 1326 WP_088461229.1 G5 and 3D domain-containing protein -
  QRA13_RS12050 (QRA13_12050) - 2492958..2493725 (-) 768 WP_017419495.1 TatD family hydrolase -
  QRA13_RS12055 (QRA13_12055) metG 2493802..2495793 (-) 1992 WP_088461221.1 methionine--tRNA ligase -
  QRA13_RS12060 (QRA13_12060) abrB 2496277..2496567 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  QRA13_RS12065 (QRA13_12065) rsmI 2496618..2497499 (-) 882 WP_088461222.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QRA13_RS12070 (QRA13_12070) - 2497474..2497773 (-) 300 WP_088461223.1 GIY-YIG nuclease family protein -
  QRA13_RS12075 (QRA13_12075) - 2497760..2498503 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QRA13_RS12080 (QRA13_12080) yabA 2498564..2498923 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  QRA13_RS12085 (QRA13_12085) ricT 2498938..2499765 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  QRA13_RS12090 (QRA13_12090) holB 2499768..2500757 (-) 990 WP_088461224.1 DNA polymerase III subunit delta' -
  QRA13_RS12095 (QRA13_12095) - 2500769..2501209 (-) 441 WP_004264730.1 DUF327 family protein -
  QRA13_RS12100 (QRA13_12100) darA 2501222..2501551 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=846509 QRA13_RS12060 WP_169510469.1 2496277..2496567(+) (abrB) [Bacillus velezensis strain YJ0-1 isolate soil]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=846509 QRA13_RS12060 WP_169510469.1 2496277..2496567(+) (abrB) [Bacillus velezensis strain YJ0-1 isolate soil]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979