Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   QRA13_RS08060 Genome accession   NZ_CP128184
Coordinates   1694479..1695270 (-) Length   263 a.a.
NCBI ID   WP_029325989.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689479..1700270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS08020 (QRA13_08020) - 1689746..1690081 (-) 336 WP_053285204.1 SdpI family protein -
  QRA13_RS08025 (QRA13_08025) - 1690167..1690694 (-) 528 WP_015417063.1 SH3 domain-containing protein -
  QRA13_RS08030 (QRA13_08030) - 1690827..1691096 (-) 270 WP_003155492.1 YfhJ family protein -
  QRA13_RS08035 (QRA13_08035) - 1691220..1691372 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  QRA13_RS08040 (QRA13_08040) - 1691517..1692428 (+) 912 WP_224224123.1 serine protease -
  QRA13_RS08045 (QRA13_08045) - 1692391..1692780 (+) 390 WP_266121969.1 DUF2606 family protein -
  QRA13_RS08050 (QRA13_08050) - 1692820..1694013 (-) 1194 WP_025284446.1 MFS transporter -
  QRA13_RS08055 (QRA13_08055) - 1694158..1694472 (-) 315 WP_007408553.1 YfhH family protein -
  QRA13_RS08060 (QRA13_08060) recX 1694479..1695270 (-) 792 WP_029325989.1 recombination regulator RecX Regulator
  QRA13_RS08065 (QRA13_08065) - 1695362..1696261 (+) 900 WP_038457356.1 TIGR01777 family oxidoreductase -
  QRA13_RS08070 (QRA13_08070) - 1696319..1696429 (+) 111 WP_003155504.1 YfhE family protein -
  QRA13_RS08075 (QRA13_08075) - 1696500..1696691 (+) 192 WP_003155508.1 YfhD family protein -
  QRA13_RS08080 (QRA13_08080) - 1696731..1697315 (-) 585 WP_007408549.1 nitroreductase -
  QRA13_RS08085 (QRA13_08085) - 1697392..1698276 (-) 885 WP_224224121.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31020.21 Da        Isoelectric Point: 6.0921

>NTDB_id=846498 QRA13_RS08060 WP_029325989.1 1694479..1695270(-) (recX) [Bacillus velezensis strain YJ0-1 isolate soil]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRYDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=846498 QRA13_RS08060 WP_029325989.1 1694479..1695270(-) (recX) [Bacillus velezensis strain YJ0-1 isolate soil]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTATGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTGGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAAACAGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791