Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QRA13_RS04660 Genome accession   NZ_CP128184
Coordinates   1087713..1088309 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1082713..1093309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS04635 (QRA13_04635) mobB 1083086..1083607 (-) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  QRA13_RS04640 (QRA13_04640) glp 1083568..1084860 (-) 1293 WP_239033834.1 gephyrin-like molybdotransferase Glp -
  QRA13_RS04645 (QRA13_04645) - 1084878..1085897 (-) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  QRA13_RS04650 (QRA13_04650) - 1085949..1086551 (-) 603 WP_239033835.1 molybdenum cofactor guanylyltransferase -
  QRA13_RS04655 (QRA13_04655) - 1086697..1087689 (+) 993 WP_130571043.1 sporulation protein -
  QRA13_RS04660 (QRA13_04660) rok 1087713..1088309 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  QRA13_RS04665 (QRA13_04665) - 1088761..1089220 (-) 460 Protein_931 TlpA disulfide reductase family protein -
  QRA13_RS04670 (QRA13_04670) - 1089508..1090314 (+) 807 WP_007611108.1 mechanosensitive ion channel family protein -
  QRA13_RS04675 (QRA13_04675) - 1090348..1090593 (-) 246 WP_003154596.1 YkuS family protein -
  QRA13_RS04680 (QRA13_04680) - 1090654..1091778 (-) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  QRA13_RS04685 (QRA13_04685) dapD 1091849..1092559 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  QRA13_RS04690 (QRA13_04690) - 1092641..1093096 (-) 456 WP_032874735.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=846481 QRA13_RS04660 WP_003154591.1 1087713..1088309(-) (rok) [Bacillus velezensis strain YJ0-1 isolate soil]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=846481 QRA13_RS04660 WP_003154591.1 1087713..1088309(-) (rok) [Bacillus velezensis strain YJ0-1 isolate soil]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843