Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QQ987_RS08945 Genome accession   NZ_CP128172
Coordinates   1803558..1804925 (-) Length   455 a.a.
NCBI ID   WP_021247354.1    Uniprot ID   T0G7P3
Organism   Sphingobium baderi strain SC-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1798558..1809925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ987_RS08915 (QQ987_08915) - 1798569..1798871 (-) 303 WP_021247348.1 GNAT family N-acetyltransferase -
  QQ987_RS08920 (QQ987_08920) obgE 1799050..1800144 (+) 1095 WP_021247349.1 GTPase ObgE -
  QQ987_RS08925 (QQ987_08925) proB 1800179..1801309 (+) 1131 WP_021247350.1 glutamate 5-kinase -
  QQ987_RS08930 (QQ987_08930) - 1801316..1802230 (+) 915 WP_031292500.1 NAD-dependent epimerase/dehydratase family protein -
  QQ987_RS08935 (QQ987_08935) - 1802535..1802903 (+) 369 WP_021247352.1 hypothetical protein -
  QQ987_RS08940 (QQ987_08940) - 1803025..1803546 (-) 522 WP_021247353.1 CvpA family protein -
  QQ987_RS08945 (QQ987_08945) radA 1803558..1804925 (-) 1368 WP_021247354.1 DNA repair protein RadA Machinery gene
  QQ987_RS08950 (QQ987_08950) - 1805015..1805713 (+) 699 WP_021247355.1 endonuclease/exonuclease/phosphatase family protein -
  QQ987_RS08955 (QQ987_08955) - 1805756..1808086 (+) 2331 WP_323809397.1 patatin-like protein -
  QQ987_RS08960 (QQ987_08960) - 1808083..1808685 (+) 603 WP_021247357.1 hypothetical protein -
  QQ987_RS08965 (QQ987_08965) - 1808746..1809039 (-) 294 WP_021247358.1 4a-hydroxytetrahydrobiopterin dehydratase -
  QQ987_RS08970 (QQ987_08970) - 1809080..1809487 (+) 408 WP_323809398.1 metallopeptidase family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 47783.68 Da        Isoelectric Point: 6.6085

>NTDB_id=846441 QQ987_RS08945 WP_021247354.1 1803558..1804925(-) (radA) [Sphingobium baderi strain SC-1]
MAKAKRKFVCQQCGTVSGRWQGQCDDCGEWNSIVEEAAETVFSARHDLQTGGRAISLIGLDSDVRLPDRTSTGIAEFDRA
LGGGIVSGSATLIGGDPGIGKSTLLLQAAARIAARGLPVAYISGEEAADQVRLRARRLGLGTAPVQLASATSVRDILTTL
GEGEPPALLVIDSIQTMHSDLIEGAPGTVSQVRASAQELIRFAKQRGTALVMVGHVTKDGSIAGPRVLEHMVDTVLSFEG
ERSHQYRILRAIKNRFGGTDEIGVFAMVAEGLEEVANPSALFLTHRDESVTGATVFPALEGTRPVLVEIQALVVRLSSGA
TPRRAVVGWDSGRLAMVLAVLEARCGLSFSTCEVYLNVAGGYRLSDPAADLAVAAALMSALAERPVPADVVLFGEIALSG
EIRPVAHAPLRLRESAKLGFNRAYVPAAAADGVKGISVSGYRALSQLVDQMLGRG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=846441 QQ987_RS08945 WP_021247354.1 1803558..1804925(-) (radA) [Sphingobium baderi strain SC-1]
ATGGCAAAGGCAAAGCGCAAATTCGTCTGTCAGCAATGCGGCACCGTATCGGGCCGCTGGCAGGGCCAGTGCGATGATTG
CGGCGAATGGAACAGCATCGTCGAGGAAGCCGCCGAAACCGTCTTTTCCGCGCGCCACGATCTCCAGACGGGAGGGCGGG
CGATTTCCCTCATCGGTCTCGACAGTGACGTGCGACTGCCCGACCGCACCAGCACCGGCATCGCGGAGTTCGACCGCGCG
CTGGGGGGCGGCATCGTTTCCGGCTCGGCCACGCTGATCGGCGGGGATCCCGGCATCGGCAAGTCCACGCTTCTCCTCCA
AGCCGCCGCCCGCATTGCCGCGCGCGGCCTGCCGGTCGCCTATATCAGCGGGGAGGAAGCCGCCGATCAGGTCCGCCTGC
GTGCCCGGCGCCTCGGCCTTGGCACCGCCCCGGTGCAACTTGCCAGCGCCACCTCCGTTCGCGACATATTGACCACGCTG
GGGGAGGGGGAGCCGCCCGCGCTGCTCGTCATCGATTCGATCCAGACCATGCACAGCGACCTGATCGAAGGCGCGCCCGG
CACCGTCAGCCAGGTCCGCGCCTCCGCCCAGGAACTCATCCGTTTCGCCAAGCAGCGCGGCACCGCCCTCGTCATGGTCG
GCCATGTGACCAAGGACGGCAGCATCGCCGGTCCCCGCGTCCTCGAACATATGGTCGATACGGTGCTGAGCTTCGAAGGC
GAGCGAAGCCATCAATACCGCATCCTGCGCGCCATCAAGAACCGCTTCGGCGGCACGGACGAGATCGGCGTCTTCGCCAT
GGTGGCCGAAGGGCTGGAGGAAGTCGCCAATCCCTCCGCTTTGTTTCTCACCCATCGCGACGAAAGCGTCACGGGCGCGA
CGGTCTTCCCCGCGCTGGAAGGAACGCGGCCTGTGCTGGTGGAAATCCAGGCGCTCGTCGTCCGCCTCTCCAGCGGCGCG
ACCCCACGCCGCGCGGTGGTGGGCTGGGACAGCGGACGGCTCGCCATGGTCCTTGCCGTGCTGGAAGCGCGTTGCGGCCT
CAGCTTCTCCACCTGCGAGGTCTATCTGAACGTCGCGGGCGGCTATCGCCTGTCGGACCCGGCGGCGGACCTTGCCGTCG
CCGCCGCGCTCATGTCCGCGCTCGCCGAACGGCCTGTTCCCGCCGACGTGGTGCTGTTCGGTGAAATCGCGCTGTCGGGC
GAAATCCGTCCCGTCGCCCATGCCCCCTTGCGGTTGCGCGAATCGGCCAAGCTCGGCTTCAATCGGGCCTATGTGCCCGC
TGCCGCAGCGGACGGTGTGAAGGGTATTTCGGTCAGCGGCTATCGCGCCCTCTCGCAGCTTGTTGACCAGATGCTTGGGC
GCGGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0G7P3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.403

100

0.481
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464
  radA Streptococcus pneumoniae Rx1

46.053

100

0.462
  radA Streptococcus pneumoniae D39

46.053

100

0.462
  radA Streptococcus pneumoniae R6

46.053

100

0.462
  radA Streptococcus pneumoniae TIGR4

46.053

100

0.462
  radA Streptococcus mitis SK321

46.882

95.165

0.446