Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QRD89_RS11445 Genome accession   NZ_CP128168
Coordinates   2155005..2156732 (-) Length   575 a.a.
NCBI ID   WP_008639230.1    Uniprot ID   -
Organism   Halobacillus sp. ACCC02827     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2150005..2161732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD89_RS11425 (QRD89_11425) - 2150685..2152034 (-) 1350 WP_286095295.1 aspartate kinase -
  QRD89_RS11430 (QRD89_11430) - 2152243..2152515 (+) 273 WP_008639223.1 hypothetical protein -
  QRD89_RS11435 (QRD89_11435) spo0A 2152552..2153331 (-) 780 WP_008639226.1 sporulation transcription factor Spo0A -
  QRD89_RS11440 (QRD89_11440) spoIVB 2153574..2154815 (-) 1242 WP_008639228.1 SpoIVB peptidase -
  QRD89_RS11445 (QRD89_11445) recN 2155005..2156732 (-) 1728 WP_008639230.1 DNA repair protein RecN Machinery gene
  QRD89_RS11450 (QRD89_11450) argR 2156748..2157197 (-) 450 WP_008639233.1 transcriptional regulator ArgR -
  QRD89_RS11455 (QRD89_11455) - 2157260..2158084 (-) 825 WP_008639235.1 TlyA family RNA methyltransferase -
  QRD89_RS11460 (QRD89_11460) dxs 2158092..2159984 (-) 1893 WP_062513742.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QRD89_RS11465 (QRD89_11465) - 2160003..2160602 (-) 600 WP_008639239.1 hypothetical protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65418.06 Da        Isoelectric Point: 4.6690

>NTDB_id=846392 QRD89_RS11445 WP_008639230.1 2155005..2156732(-) (recN) [Halobacillus sp. ACCC02827]
MLTELSIRDFAIIDQISITFKEGLTVLTGETGAGKSIIIDAIQLLSGGRGSVEFVRHGTKKAEIEGLFIVERDHPIYRTG
EAFGVDIQDDGMVVLNRTITNQGKSICRVNGKLVTLGIMKEFGQALIDIHSQHETQSLMDPDRHIELLDVFAGEGIRPTL
EEYQQVFDKYRTLRKRYKDLSQNEQEMAQRLDLLEFQLRELQEAEMEPKEDEELAEERKKLLNYEKIYQGIHDAYYSLYG
EQRGLDWLSHAMTSLESTADVDENIAKISEELANSYYLIEEMTFQLSSQMAELEFDPERLNQMESRLNELNRLKKKYGGT
VDDMLQYASKIEEEIDEIRNKDSHLSKMESDIYELGQDAVLEAKAIHDIRMEAASRLGEYIHEELRDLYLEKASFAVDIR
MKEGKEQDPMFEGKPVQLMPNGTDIVKFLITTNPGEPLKELHKVASGGEMSRIMLALKRIFSRHQGVTSVIFDEVDTGVS
GRVAQAIAEKIYGISEGSQVLCISHLPQVAAMADTHIRIEKRVDNDRTHTAASELTHEEQADEISRMITGAELTETTVEH
AKELLVMADKHKRNK

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=846392 QRD89_RS11445 WP_008639230.1 2155005..2156732(-) (recN) [Halobacillus sp. ACCC02827]
ATGTTAACGGAATTATCCATTCGTGATTTTGCAATTATCGATCAGATTTCCATTACATTTAAAGAAGGTTTGACCGTTTT
AACTGGAGAGACCGGTGCCGGTAAGTCGATTATCATCGATGCTATTCAACTGCTGTCAGGCGGAAGAGGCTCTGTAGAGT
TCGTCCGGCATGGAACGAAAAAGGCGGAAATAGAGGGTTTATTTATCGTGGAGCGCGACCACCCGATTTACCGTACAGGG
GAAGCGTTTGGAGTGGACATTCAGGATGATGGAATGGTTGTCTTGAACAGGACGATTACAAATCAGGGAAAGAGCATATG
TCGCGTAAACGGAAAGCTTGTTACACTTGGCATTATGAAGGAGTTTGGTCAGGCCCTCATTGATATACACAGCCAACATG
AAACACAGTCATTGATGGACCCTGATCGACACATAGAGCTTCTCGATGTATTTGCCGGGGAAGGCATTCGTCCGACGCTT
GAGGAGTATCAGCAGGTCTTTGATAAGTACAGGACATTGAGGAAACGGTATAAGGATTTGAGTCAGAATGAGCAGGAGAT
GGCGCAGCGGCTTGACCTTCTTGAATTTCAGCTTCGCGAACTTCAGGAAGCGGAGATGGAACCTAAAGAGGATGAAGAGC
TGGCTGAGGAACGTAAGAAACTGCTTAATTATGAGAAAATTTATCAAGGCATTCATGATGCCTATTATTCCCTTTATGGT
GAACAGCGGGGTCTCGATTGGCTTAGTCATGCGATGACTTCCTTGGAAAGCACGGCGGATGTCGATGAGAACATCGCAAA
AATATCAGAGGAATTGGCTAATTCTTATTATTTAATCGAAGAAATGACCTTCCAGTTGAGCAGTCAAATGGCTGAACTGG
AATTTGATCCTGAACGATTGAATCAAATGGAGTCAAGGTTGAATGAGCTCAACCGTTTGAAGAAAAAATATGGTGGTACA
GTGGATGATATGCTTCAATACGCATCTAAGATTGAGGAAGAAATTGATGAGATTAGGAACAAGGACTCTCATTTAAGTAA
GATGGAATCAGACATATATGAACTTGGTCAGGATGCCGTATTAGAAGCGAAAGCAATCCACGACATACGAATGGAAGCAG
CTTCGCGTCTAGGGGAATACATTCATGAAGAGCTGCGCGATTTATATTTAGAAAAAGCATCTTTTGCGGTTGATATCCGT
ATGAAGGAAGGAAAAGAACAGGATCCAATGTTTGAAGGTAAGCCGGTTCAGCTGATGCCAAACGGTACGGATATTGTGAA
ATTCCTCATTACCACAAATCCAGGAGAACCGCTTAAAGAATTACATAAAGTAGCTTCCGGTGGAGAAATGTCACGTATAA
TGCTTGCACTAAAGCGGATATTTTCCAGACACCAGGGAGTAACGAGCGTCATATTCGATGAAGTCGACACAGGTGTAAGC
GGCAGAGTAGCTCAGGCGATTGCTGAGAAGATATACGGCATCTCCGAAGGATCCCAAGTGCTCTGCATCTCCCACCTGCC
ACAAGTAGCTGCAATGGCCGATACGCACATTAGGATTGAGAAGCGCGTGGATAATGATCGAACCCACACAGCTGCTTCGG
AATTAACACACGAAGAGCAGGCGGATGAAATTTCACGAATGATTACCGGCGCAGAATTGACGGAAACGACAGTCGAGCAT
GCAAAAGAACTACTCGTTATGGCAGATAAACATAAACGTAATAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.226

99.826

0.551