Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QRD89_RS05810 Genome accession   NZ_CP128168
Coordinates   1113036..1114847 (+) Length   603 a.a.
NCBI ID   WP_026578367.1    Uniprot ID   A0A7Z2SV90
Organism   Halobacillus sp. ACCC02827     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1108036..1119847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD89_RS05785 (QRD89_05785) - 1108731..1109321 (+) 591 WP_008638742.1 GNAT family N-acetyltransferase -
  QRD89_RS05790 (QRD89_05790) spxA 1109608..1110003 (+) 396 WP_008638741.1 transcriptional regulator SpxA -
  QRD89_RS05795 (QRD89_05795) - 1110073..1110738 (-) 666 WP_008638740.1 TerC family protein -
  QRD89_RS05800 (QRD89_05800) mecA 1111038..1111730 (+) 693 WP_008638737.1 adaptor protein MecA -
  QRD89_RS05805 (QRD89_05805) - 1111826..1112953 (+) 1128 WP_286096857.1 competence protein CoiA family protein -
  QRD89_RS05810 (QRD89_05810) pepF 1113036..1114847 (+) 1812 WP_026578367.1 oligoendopeptidase F Regulator
  QRD89_RS05815 (QRD89_05815) - 1114909..1115088 (-) 180 WP_008638734.1 hypothetical protein -
  QRD89_RS05820 (QRD89_05820) - 1115176..1116063 (-) 888 WP_008638733.1 ClpXP adapter SpxH family protein -
  QRD89_RS05825 (QRD89_05825) - 1116060..1116458 (-) 399 WP_008638732.1 globin -
  QRD89_RS05830 (QRD89_05830) - 1116519..1117100 (-) 582 WP_008638731.1 CYTH domain-containing protein -
  QRD89_RS05835 (QRD89_05835) - 1117233..1117871 (+) 639 WP_008638730.1 GTP pyrophosphokinase family protein -
  QRD89_RS05840 (QRD89_05840) - 1117886..1118692 (+) 807 WP_008638727.1 NAD kinase -
  QRD89_RS05845 (QRD89_05845) - 1118682..1119569 (+) 888 WP_236096541.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69328.81 Da        Isoelectric Point: 4.8652

>NTDB_id=846384 QRD89_RS05810 WP_026578367.1 1113036..1114847(+) (pepF) [Halobacillus sp. ACCC02827]
MSSTKQLPKREEIPVEKTWDLEAIFETDEKWYEELKAIEGMLPELDNYRGNLGASAEQLYKLLDFQDKISNRIGRLYTYA
HMRNDQDTTNSHYQEMNAKAESLFTKLASAMSFIVPEILALPEGTVKGYLDTYKPLELYRHTLDEITRQRAHVLSEQEEK
LLAGFSEIGANPSQTFGALNNADITFPVIKNEKGEDVELTHGRYVGFLKSDDRDVRRRAFEAMYDTFGSFKNTFASTLSG
HVKKNNFNATVRKYDRARQAKLDNNNIPESVYDNLIEAVHERLPLLHRYAEMRKEVLGLDEVHMYDLYTPLVKDAEMEVS
YEEAQKLVLDGLKPLGEEYGEILQSAFKDRWIDVEENKGKRSGAYSSGHYGTNPYILMNWQDNVNNLFTLAHELGHSLHS
YYTHRNQPYRYGNYSIFVAEVASTCNEALLNDHLLNKVDSDKEKLYLLNNFLEGFRGTVFRQTMFAEFEHEIHIQAQNGE
ALTAGKLTEIYYDLNKKYFGDNIVIDDDIGLEWARIPHFYMGYYVYQYATGYAAAQALAGQILEEGEPAVDRYKSFLKAG
SSDYPIEVLKRAGVDMTSKDPILAALDVFEEKLNEMEQLLQKA

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=846384 QRD89_RS05810 WP_026578367.1 1113036..1114847(+) (pepF) [Halobacillus sp. ACCC02827]
ATGTCTTCAACGAAACAATTACCAAAACGTGAGGAGATTCCTGTAGAAAAAACGTGGGACCTCGAGGCTATATTTGAAAC
GGATGAGAAATGGTATGAAGAGCTGAAAGCGATTGAGGGAATGCTTCCCGAACTGGACAACTATCGGGGGAATTTAGGAG
CATCGGCCGAGCAGCTTTACAAACTGCTTGATTTCCAGGACAAAATTTCGAATCGCATCGGCCGTCTATATACTTATGCC
CATATGAGGAACGATCAGGATACGACGAACTCTCATTATCAGGAGATGAATGCGAAAGCGGAATCGCTGTTTACCAAACT
CGCCTCTGCGATGAGCTTCATCGTTCCTGAAATTCTTGCGCTGCCGGAAGGTACGGTTAAAGGATACCTTGATACTTACA
AGCCGTTGGAATTATACAGACACACCCTTGATGAGATTACGCGGCAGCGGGCACATGTGCTCAGTGAACAGGAAGAGAAG
CTGTTGGCTGGTTTTTCGGAAATCGGGGCGAATCCTTCCCAGACCTTCGGAGCGCTTAACAATGCGGACATTACTTTCCC
TGTGATTAAAAACGAGAAGGGGGAAGACGTGGAGCTCACGCACGGCCGCTATGTCGGATTCTTGAAATCAGATGACAGAG
ATGTACGCAGGCGTGCGTTTGAAGCGATGTACGACACGTTCGGTTCCTTTAAGAATACGTTCGCTTCCACGCTCAGCGGG
CATGTGAAGAAGAATAATTTCAATGCGACGGTAAGGAAGTATGACCGGGCTCGTCAGGCGAAGCTTGATAACAACAACAT
CCCTGAATCCGTATACGACAACTTGATTGAAGCAGTTCATGAACGGCTGCCTTTATTACATCGTTATGCAGAAATGCGTA
AAGAGGTCCTCGGGTTGGATGAAGTGCATATGTACGACTTATATACACCGCTTGTTAAGGATGCGGAAATGGAAGTTTCT
TATGAAGAAGCGCAGAAGCTTGTGCTGGACGGGCTGAAACCGCTTGGAGAAGAGTACGGGGAGATCCTTCAGTCAGCATT
TAAAGATCGGTGGATCGATGTCGAAGAGAATAAAGGAAAACGGAGCGGTGCGTATTCCTCGGGCCACTACGGTACCAACC
CTTACATCCTTATGAACTGGCAGGACAACGTGAACAACTTGTTCACCCTTGCTCACGAGCTCGGCCACTCCCTGCACAGT
TACTACACGCACCGGAACCAGCCATATCGTTACGGTAACTACTCCATCTTTGTGGCAGAGGTTGCATCTACTTGTAATGA
AGCGCTGTTGAACGATCATCTTTTGAACAAAGTTGACAGTGACAAGGAAAAGCTGTACCTGTTGAATAATTTTCTGGAAG
GCTTTCGGGGAACCGTCTTTCGTCAGACGATGTTCGCGGAGTTCGAGCATGAAATTCATATTCAGGCCCAGAACGGGGAG
GCTCTTACAGCCGGTAAGCTGACAGAAATCTATTATGATTTGAATAAGAAGTATTTCGGTGACAATATCGTCATTGATGA
CGACATCGGATTGGAATGGGCGCGCATCCCGCACTTCTATATGGGATACTACGTCTATCAGTATGCTACAGGTTATGCAG
CCGCACAGGCACTGGCGGGGCAGATCCTGGAAGAGGGCGAACCAGCGGTCGACCGCTATAAGAGCTTCCTTAAGGCGGGC
AGCAGTGATTACCCGATCGAGGTGTTGAAACGCGCCGGCGTAGATATGACCTCCAAAGATCCGATTCTTGCTGCACTGGA
CGTGTTTGAAGAGAAGTTGAATGAAATGGAACAATTGCTGCAGAAAGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(208-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2SV90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.993

98.839

0.484