Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QRE67_RS24125 Genome accession   NZ_CP128153
Coordinates   4779088..4780434 (-) Length   448 a.a.
NCBI ID   WP_286122681.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4774088..4785434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS24105 (QRE67_24100) secA 4774332..4776842 (-) 2511 WP_286122678.1 preprotein translocase subunit SecA -
  QRE67_RS24110 (QRE67_24105) raiA 4777157..4777699 (-) 543 WP_286122679.1 ribosome-associated translation inhibitor RaiA -
  QRE67_RS24115 (QRE67_24110) cspD 4778031..4778228 (-) 198 WP_286125370.1 cold-shock protein CspD -
  QRE67_RS24120 (QRE67_24115) - 4778384..4779088 (-) 705 WP_286122680.1 ComF family protein -
  QRE67_RS24125 (QRE67_24120) comFA 4779088..4780434 (-) 1347 WP_286122681.1 DEAD/DEAH box helicase Machinery gene
  QRE67_RS24130 (QRE67_24125) - 4780781..4781002 (-) 222 WP_286122682.1 heavy-metal-associated domain-containing protein -
  QRE67_RS24135 (QRE67_24130) - 4781276..4782055 (-) 780 Protein_4697 transposase -
  QRE67_RS24140 (QRE67_24135) - 4782009..4782725 (-) 717 WP_353507047.1 phosphomevalonate kinase -
  QRE67_RS24145 (QRE67_24140) mvaD 4782798..4783787 (-) 990 WP_286125371.1 diphosphomevalonate decarboxylase -
  QRE67_RS24150 (QRE67_24145) - 4784246..4784914 (-) 669 WP_286122684.1 chlorite dismutase family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 51445.07 Da        Isoelectric Point: 10.0638

>NTDB_id=846367 QRE67_RS24125 WP_286122681.1 4779088..4780434(-) (comFA) [Bacillus sp. DX3.1]
MLEGRQMLLEELSLSKDELDRLQRQGDVSLERGVVRKSPYYLCQRCGNSEQRLFASFLCKRCNQNCTYCRKCIMMGRVGE
CTVLVRGIRDLERIPVQHTLRWEGTLSQGQELAALGVTEAVRQRESFFIWAVCGAGKTEMLFYGIEEALRKGKRICIATP
RTDVVLELYPRLQTVFPGIPIAALYGGSLEREKEARLVVSTTHQLLRYYRAFDVMIVDEIDAFPYSMDRTLHYAVQQASK
ERATRIYLTATPSDKWKRKLWNGKQKGAIIPGRYHRHPLPVPRFRWCGNWKKSLGKKRIPHVVLEWLHMCLLKQYPIFLF
LPHVRYIEEVSMLLKEFDVRVEGVHAEDPRRKEKVAAFRKGDIPLLVTTTILERGVTVANLQVAVLGAEEAVFSESALVQ
IAGRVGRSGSAPKGDVFYFHYGKTEAMLRAKRHIQSMNKRAKKQGLID

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=846367 QRE67_RS24125 WP_286122681.1 4779088..4780434(-) (comFA) [Bacillus sp. DX3.1]
ATGTTAGAAGGGCGGCAAATGCTATTAGAAGAACTTTCGTTATCAAAGGATGAACTAGATCGTTTGCAGCGGCAAGGGGA
TGTTTCTTTGGAAAGAGGTGTTGTACGGAAATCGCCCTACTATTTGTGTCAACGCTGCGGAAATTCGGAACAACGGTTGT
TTGCTTCATTTTTATGTAAACGATGTAATCAGAATTGTACGTATTGCCGAAAATGCATCATGATGGGACGAGTGGGAGAA
TGCACAGTACTTGTTCGGGGCATCCGGGATTTAGAAAGAATCCCAGTGCAACATACCTTGCGGTGGGAAGGAACATTATC
GCAAGGACAGGAACTGGCAGCGCTTGGCGTAACGGAGGCTGTGCGGCAAAGAGAATCATTTTTTATCTGGGCAGTGTGCG
GAGCTGGTAAGACAGAGATGTTGTTTTACGGTATAGAAGAAGCGCTTCGAAAAGGCAAGCGCATATGTATTGCGACACCA
CGTACCGATGTTGTACTCGAACTATATCCGCGTCTTCAAACGGTTTTTCCAGGTATACCTATTGCTGCGTTATACGGTGG
GAGTTTAGAACGTGAAAAGGAAGCTAGACTTGTCGTTTCCACAACGCATCAGTTGCTGCGCTATTATCGGGCATTTGATG
TCATGATTGTCGATGAAATTGATGCTTTTCCCTATTCTATGGATAGGACGCTACATTATGCTGTCCAGCAAGCGAGTAAA
GAGCGAGCAACTCGCATTTACTTAACAGCAACTCCATCAGATAAATGGAAACGAAAACTTTGGAATGGAAAACAAAAAGG
TGCTATTATTCCAGGACGTTATCATCGTCATCCTTTACCAGTTCCTCGTTTTCGGTGGTGCGGAAATTGGAAGAAATCAC
TAGGGAAAAAAAGAATACCTCACGTTGTCTTAGAATGGCTCCATATGTGTCTCCTCAAGCAATATCCCATCTTTTTATTT
CTTCCACATGTACGTTATATCGAAGAAGTAAGTATGCTGTTAAAAGAATTTGATGTACGAGTTGAAGGTGTTCATGCAGA
AGATCCAAGGCGAAAAGAGAAAGTCGCTGCGTTTCGAAAGGGGGATATTCCATTGCTAGTAACAACGACGATTTTAGAAC
GTGGCGTGACAGTAGCAAATTTACAAGTTGCTGTATTAGGGGCAGAGGAAGCCGTTTTTTCAGAAAGTGCACTTGTACAA
ATTGCAGGTCGTGTTGGCAGAAGCGGTAGCGCACCAAAAGGCGATGTGTTCTATTTTCATTATGGGAAAACAGAGGCGAT
GTTACGTGCAAAAAGGCATATTCAATCTATGAATAAAAGGGCGAAGAAGCAAGGTTTGATTGACTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(312-409)

Type III restriction enzyme, res subunit (ResIII)

(106-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.559

99.777

0.504
  comFA Latilactobacillus sakei subsp. sakei 23K

41.912

91.071

0.382