Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QRE67_RS20100 Genome accession   NZ_CP128153
Coordinates   4007262..4008008 (-) Length   248 a.a.
NCBI ID   WP_286121975.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4002262..4013008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS20080 (QRE67_20075) dnaG 4003131..4004927 (-) 1797 WP_286121971.1 DNA primase -
  QRE67_RS20085 (QRE67_20080) - 4004966..4005424 (-) 459 WP_286121972.1 YaiI/YqxD family protein -
  QRE67_RS20090 (QRE67_20085) - 4005680..4006492 (-) 813 WP_286121973.1 pyruvate, water dikinase regulatory protein -
  QRE67_RS20095 (QRE67_20090) - 4006522..4007154 (-) 633 WP_286121974.1 helix-turn-helix transcriptional regulator -
  QRE67_RS20100 (QRE67_20095) recO 4007262..4008008 (-) 747 WP_286121975.1 DNA repair protein RecO Machinery gene
  QRE67_RS20105 (QRE67_20100) - 4008042..4008185 (-) 144 WP_000883923.1 YqzL family protein -
  QRE67_RS20110 (QRE67_20105) era 4008430..4009335 (-) 906 WP_286121976.1 GTPase Era -
  QRE67_RS20115 (QRE67_20110) - 4009328..4009726 (-) 399 WP_286121977.1 cytidine deaminase -
  QRE67_RS20120 (QRE67_20115) - 4009991..4010344 (-) 354 WP_286121978.1 diacylglycerol kinase family protein -
  QRE67_RS20125 (QRE67_20120) ybeY 4010341..4010811 (-) 471 WP_286121979.1 rRNA maturation RNase YbeY -
  QRE67_RS20130 (QRE67_20125) - 4010808..4012952 (-) 2145 WP_286121980.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28614.17 Da        Isoelectric Point: 7.4189

>NTDB_id=846356 QRE67_RS20100 WP_286121975.1 4007262..4008008(-) (recO) [Bacillus sp. DX3.1]
MFQKIEGIIIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASISQLMTHGYFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQSLHYMCEGVDPEVLALIYQTKMLPVLGMQPYFDTCAICHQEAD
FVAFSVREGGFLCKHHAEQDPYRIPVGEAVHKLLRLFYHFDLARLGNVSVKDETKRQMRTVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=846356 QRE67_RS20100 WP_286121975.1 4007262..4008008(-) (recO) [Bacillus sp. DX3.1]
ATGTTTCAAAAGATTGAAGGAATTATCATCCGGACCACAGATTACGGAGAAACAAATAAAATTGTCACGATATTCTCTCG
TGAGCTTGGAAAAGTAAGTGCAATGGCGAGAGGTGCGAAAAAACCAAAAAGTAGGCTAGCGTCTATTTCGCAACTTATGA
CTCATGGTTACTTTCTAATTCAAATGGGGTCTGGACTTGGGACTTTGCAACAAGGTGAAATAATTTCATCCATGAAAGAA
ATTCGTGAAGATATATTTTTAACTGCATATGCATCATTTATTGTTGAGTTGACTGATAAAGCAACGGAAGATAAAAAGCA
TAACCCATATTTATTTGAGATGCTATATCAATCACTGCATTACATGTGTGAGGGTGTCGATCCTGAAGTTTTAGCGTTAA
TTTATCAAACGAAAATGCTTCCAGTATTAGGTATGCAACCCTATTTTGATACATGTGCTATTTGTCACCAAGAAGCAGAT
TTTGTCGCCTTCTCCGTTCGAGAAGGCGGTTTTCTGTGTAAGCATCATGCTGAACAAGATCCATATCGCATTCCGGTTGG
GGAGGCTGTTCATAAATTACTGCGCCTTTTTTATCATTTTGATTTAGCTCGCCTTGGTAATGTGTCAGTGAAAGATGAAA
CAAAACGGCAAATGCGTACAGTATTAAATACATATTATGATGAATATTGTGGAATTTATTTGAAATCAAGGCGTTTTCTG
GAGCAACTTGATAAATTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.87

99.597

0.556