Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QRE67_RS19835 Genome accession   NZ_CP128153
Coordinates   3953857..3954900 (-) Length   347 a.a.
NCBI ID   WP_286125334.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3948857..3959900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS19790 (QRE67_19785) - 3949358..3949987 (+) 630 WP_286121920.1 VC0807 family protein -
  QRE67_RS19795 (QRE67_19790) - 3950220..3950420 (-) 201 WP_286121921.1 YqzE family protein -
  QRE67_RS19800 (QRE67_19795) - 3950456..3950953 (-) 498 WP_286121922.1 shikimate kinase -
  QRE67_RS19805 (QRE67_19800) comGG 3950955..3951332 (-) 378 WP_286121923.1 competence type IV pilus minor pilin ComGG -
  QRE67_RS19810 (QRE67_19805) comGF 3951329..3951790 (-) 462 WP_286121924.1 competence type IV pilus minor pilin ComGF -
  QRE67_RS19815 (QRE67_19810) comGE 3951777..3952094 (-) 318 WP_286121925.1 competence type IV pilus minor pilin ComGE -
  QRE67_RS19820 (QRE67_19815) comGD 3952072..3952518 (-) 447 Protein_3862 competence type IV pilus minor pilin ComGD -
  QRE67_RS19825 (QRE67_19820) comGC 3952515..3952817 (-) 303 WP_286121926.1 competence type IV pilus major pilin ComGC -
  QRE67_RS19830 (QRE67_19825) comGB 3952830..3953870 (-) 1041 WP_286125333.1 competence type IV pilus assembly protein ComGB -
  QRE67_RS19835 (QRE67_19830) comGA 3953857..3954900 (-) 1044 WP_286125334.1 competence type IV pilus ATPase ComGA Machinery gene
  QRE67_RS19840 (QRE67_19835) - 3955127..3955822 (+) 696 WP_286121927.1 helix-turn-helix domain-containing protein -
  QRE67_RS19845 (QRE67_19840) - 3955964..3956206 (+) 243 WP_286121928.1 DUF2626 domain-containing protein -
  QRE67_RS19850 (QRE67_19845) - 3956311..3957705 (+) 1395 WP_286121929.1 L-cystine transporter -
  QRE67_RS19855 (QRE67_19850) - 3957919..3958134 (-) 216 WP_286121930.1 DUF3912 family protein -
  QRE67_RS19860 (QRE67_19855) - 3958586..3958897 (+) 312 WP_286121931.1 hypothetical protein -
  QRE67_RS19865 (QRE67_19860) - 3958954..3959445 (-) 492 WP_286121932.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39097.46 Da        Isoelectric Point: 8.3798

>NTDB_id=846355 QRE67_RS19835 WP_286125334.1 3953857..3954900(-) (comGA) [Bacillus sp. DX3.1]
MNAIERFANTIMKEACVLQASDLHIVPRQEDAVIQLRIGKDLVKKHCIAKEFGERLVSHFKFLASMDIGERRKPQNGSLY
LQIDGQEVHLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSSAKTLLSFLHHSHGLLVFTGPTGSGKTTTMYALLEV
AKKQQTRRIVTLEDPIEKRKEGLLQIQINEKAGITYTTGLKAILRHDPDIILVGEIRDEETAKVAVRASLTGHLVMTTLH
TNDAKGAVLRFMDYGITLQEIEQSLLAVAAQRLVELKCPFCKGKCSPLCKGMRQVRQASIYELLYGHELKQVIREANGEH
VTYHYETLQECVRKGYALGFLEEDMYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=846355 QRE67_RS19835 WP_286125334.1 3953857..3954900(-) (comGA) [Bacillus sp. DX3.1]
ATGAATGCCATTGAACGTTTTGCGAATACGATTATGAAAGAAGCGTGTGTATTACAAGCATCAGATTTACACATTGTACC
GCGGCAGGAAGATGCAGTTATACAATTGCGTATTGGAAAAGATTTAGTAAAGAAGCATTGTATTGCAAAAGAATTTGGAG
AAAGACTTGTTTCGCATTTTAAATTTTTAGCGTCCATGGATATAGGTGAAAGGCGTAAGCCACAAAATGGGTCACTGTAT
TTACAAATTGATGGACAAGAAGTACATTTACGCCTCTCTACATTGCCGACGGTTTATCAAGAAAGTCTTGTCATTCGCTT
GCACTTACAAGCGTCAGTTCAACCACTTTCCCACCTCTCTTTATTTCCAAGCTCAGCAAAAACACTTCTCTCTTTTTTAC
ATCATTCTCACGGGCTGTTAGTTTTTACTGGACCAACAGGATCAGGAAAGACAACAACGATGTATGCTCTTTTAGAAGTA
GCGAAAAAACAACAAACGCGTCGTATCGTTACGCTTGAGGATCCGATTGAGAAACGAAAGGAGGGGTTATTACAAATTCA
AATCAACGAAAAGGCAGGTATCACGTATACAACAGGTCTAAAAGCAATTTTGCGTCATGATCCCGATATTATTTTAGTTG
GCGAAATTCGTGATGAAGAGACAGCAAAGGTAGCAGTGCGTGCTAGCTTAACGGGTCATTTAGTTATGACAACGCTGCAT
ACAAATGATGCGAAAGGAGCGGTGTTACGTTTCATGGATTATGGGATTACGCTACAAGAAATTGAACAATCATTACTCGC
AGTAGCAGCACAGCGTCTCGTCGAATTAAAATGTCCATTTTGCAAAGGAAAATGTTCGCCGTTATGTAAAGGAATGCGTC
AAGTACGGCAGGCGAGTATTTATGAGCTATTGTATGGTCATGAACTGAAACAAGTCATTCGCGAAGCAAATGGAGAACAT
GTAACGTATCATTATGAAACACTACAGGAGTGTGTGAGAAAAGGGTATGCCTTAGGCTTTTTAGAAGAGGATATGTATGT
TTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.79

100

0.588
  pilB Glaesserella parasuis strain SC1401

42.282

85.879

0.363