Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QRE67_RS18550 Genome accession   NZ_CP128153
Coordinates   3733923..3734357 (-) Length   144 a.a.
NCBI ID   WP_286121692.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3728923..3739357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS18535 (QRE67_18525) - 3729314..3730291 (-) 978 Protein_3605 RNA-guided endonuclease TnpB family protein -
  QRE67_RS18540 (QRE67_18530) metE 3730903..3733191 (+) 2289 WP_286121690.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  QRE67_RS18545 (QRE67_18535) comJ 3733476..3733865 (-) 390 WP_286121691.1 competence protein ComJ -
  QRE67_RS18550 (QRE67_18540) nucA/comI 3733923..3734357 (-) 435 WP_286121692.1 DNA-entry nuclease Machinery gene
  QRE67_RS18555 (QRE67_18545) - 3734598..3735350 (+) 753 WP_286121693.1 DUF3967 domain-containing protein -
  QRE67_RS18560 (QRE67_18550) - 3735377..3736651 (-) 1275 WP_286121694.1 HAMP domain-containing sensor histidine kinase -
  QRE67_RS18565 (QRE67_18555) - 3736963..3737163 (+) 201 WP_286121695.1 hypothetical protein -
  QRE67_RS18570 (QRE67_18560) - 3737425..3738582 (+) 1158 WP_286121696.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16104.45 Da        Isoelectric Point: 8.9015

>NTDB_id=846352 QRE67_RS18550 WP_286121692.1 3733923..3734357(-) (nucA/comI) [Bacillus sp. DX3.1]
MKQLKGIIISIIAILSILVAVYEVFTPTEPKSKKEFAYDQVLDFPKERYPETGKHIADAINEGHSEVCTIDRNGAADRRK
LSLAPYPAKKGYDRDEWPMAMCKEGGKGAHIEYINPSDNRGAGSWVGNKLDKYSDGTRVKFVVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=846352 QRE67_RS18550 WP_286121692.1 3733923..3734357(-) (nucA/comI) [Bacillus sp. DX3.1]
ATGAAGCAATTAAAAGGCATTATTATTTCAATTATCGCGATTCTTTCTATCTTGGTTGCTGTTTATGAGGTATTCACACC
AACAGAACCAAAGAGTAAGAAAGAATTCGCATATGACCAAGTTCTAGATTTTCCAAAAGAACGTTACCCTGAAACTGGAA
AGCATATTGCAGATGCAATAAATGAAGGGCATTCTGAGGTATGTACGATTGATCGAAATGGTGCAGCTGATAGAAGAAAG
CTGTCTTTAGCTCCGTATCCAGCAAAAAAAGGGTATGACCGTGATGAATGGCCGATGGCAATGTGCAAAGAAGGTGGAAA
AGGTGCACATATTGAATATATTAATCCGAGTGATAACCGAGGTGCCGGTTCTTGGGTTGGGAATAAGTTAGACAAATATT
CAGATGGCACACGTGTGAAATTTGTGGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.167

83.333

0.535