Detailed information NTG0084635

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QMG68_RS25505
• Genome accession: NZ_AP027188
• Coordinates: 4917143..4918135 (-)
• Length: 330 a.a.
• NCBI ID: WP_000224470.1
• Uniprot ID: -
• Organism: Escherichia coli strain PV0838
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4912143..4923135

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMG68_RS25495 (PV0838_4901)	yieP	4915035..4915727 (+)	693	WP_100031398.1	FadR/GntR family transcriptional regulator	-
QMG68_RS25500 (PV0838_4902)	mdtD	4915750..4917177 (+)	1428	WP_001280840.1	multidrug transporter subunit MdtD	-
QMG68_RS25505 (PV0838_4903)	cytR	4917143..4918135 (-)	993	WP_000224470.1	ribose operon transcriptional repressor RbsR	Regulator
QMG68_RS25510 (PV0838_4904)	rbsK	4918139..4919068 (-)	930	WP_001300603.1	ribokinase	-
QMG68_RS25515 (PV0838_4905)	rbsB	4919194..4920084 (-)	891	WP_001056273.1	ribose ABC transporter substrate-binding protein RbsB	-
QMG68_RS25520 (PV0838_4906)	rbsC	4920109..4921074 (-)	966	WP_000211858.1	ribose ABC transporter permease	-
QMG68_RS25525 (PV0838_4907)	rbsA	4921079..4922584 (-)	1506	WP_000387752.1	ribose ABC transporter ATP-binding protein RbsA	-
QMG68_RS25530 (PV0838_4908)	rbsD	4922592..4923011 (-)	420	WP_000715936.1	D-ribose pyranase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 17730.57 Da
• Isoelectric Point: 4.7821

>NTDB_id=84635 QMG68_RS25505 WP_000224470.1 4917143..4918135(-) (cytR) [Escherichia coli strain PV0838]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide

• Length: 993 bp

>NTDB_id=84635 QMG68_RS25505 WP_000224470.1 4917143..4918135(-) (cytR) [Escherichia coli strain PV0838]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGAGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACTGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.932	100	0.635
ssb	Latilactobacillus sakei subsp. sakei 23K	52.941	100	0.577
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.434	67.949	0.404
ssb	Neisseria meningitidis MC58	34.682	100	0.385
ssb	Neisseria gonorrhoeae MS11	34.682	100	0.385
ssb	Glaesserella parasuis strain SC1401	32.203	100	0.365