Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QRE67_RS07595 Genome accession   NZ_CP128153
Coordinates   1518705..1519307 (-) Length   200 a.a.
NCBI ID   WP_286124291.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1513705..1524307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS07575 (QRE67_07570) dnaD 1514097..1514804 (+) 708 WP_286124287.1 DNA replication protein DnaD -
  QRE67_RS07580 (QRE67_07575) nth 1514820..1515467 (+) 648 WP_286124288.1 endonuclease III -
  QRE67_RS07585 (QRE67_07580) - 1515472..1515990 (+) 519 WP_286124289.1 YpoC family protein -
  QRE67_RS07590 (QRE67_07585) - 1516009..1518639 (-) 2631 WP_286124290.1 penicillin-binding protein 1A -
  QRE67_RS07595 (QRE67_07590) recU 1518705..1519307 (-) 603 WP_286124291.1 Holliday junction resolvase RecU Machinery gene
  QRE67_RS07600 (QRE67_07595) - 1519411..1520412 (+) 1002 WP_286124292.1 DUF2515 domain-containing protein -
  QRE67_RS07605 (QRE67_07600) - 1520915..1521157 (+) 243 WP_286124293.1 hypothetical protein -
  QRE67_RS07610 (QRE67_07605) - 1521173..1521517 (+) 345 WP_286124294.1 YppE family protein -
  QRE67_RS07615 (QRE67_07610) - 1521543..1521737 (-) 195 WP_286124295.1 YppF family protein -
  QRE67_RS07620 (QRE67_07615) - 1521917..1522450 (+) 534 WP_286124296.1 YppG family protein -
  QRE67_RS07625 (QRE67_07620) - 1522924..1523442 (+) 519 WP_286124297.1 CotD family spore coat protein -
  QRE67_RS07630 (QRE67_07625) - 1523665..1524219 (+) 555 WP_286124298.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23469.78 Da        Isoelectric Point: 9.5398

>NTDB_id=846344 QRE67_RS07595 WP_286124291.1 1518705..1519307(-) (recU) [Bacillus sp. DX3.1]
MTIRYPNGKRYNQALQPQKTQLKKHTYSNRGMSLEEELNETNQYYLTHNIACIHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGRYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLYDEFYLLDAKHVISFWNRQ
DAGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=846344 QRE67_RS07595 WP_286124291.1 1518705..1519307(-) (recU) [Bacillus sp. DX3.1]
ATGACCATTCGTTATCCGAACGGAAAAAGGTACAATCAAGCGTTACAACCTCAAAAAACACAATTAAAAAAGCATACTTA
TAGTAATAGAGGTATGTCTCTTGAAGAGGAATTAAATGAAACAAATCAATATTATTTAACACATAATATTGCATGTATAC
ATAAAAAGCCCACCCCTCTTCAAATTGTAAAAGTAGATTACCCTGCTCGAAGTGCCGCAGTTGTAAAAGAGGCTTATTTT
AAACAGCCATCTACAACGGACTACAACGGTGTATACAAAGGACGGTACATTGACTTTGAGGCGAAAGAAACCAAAAATAA
AACAAGTTTTCCGTTGCAAAACTTCCATCTTCATCAAATTGAACATATGAAACAAGTAGTAGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACGCTTTATGATGAATTTTATTTACTCGATGCAAAACATGTTATTTCATTTTGGAATCGCCAA
GATGCCGGTGGACGCAAATCGATTACAAAACAAGAAATCGAAGAGCACGGATCCTTATTATCATGCGGTTATCACCCTCG
AATCGATTATATTCGCGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

64.5

100

0.645