Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QRE67_RS06255 Genome accession   NZ_CP128153
Coordinates   1259462..1259785 (-) Length   107 a.a.
NCBI ID   WP_286124038.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1254462..1264785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS06230 (QRE67_06225) sipW 1255067..1255642 (+) 576 WP_286124032.1 signal peptidase I SipW -
  QRE67_RS06235 (QRE67_06230) - 1256043..1256795 (+) 753 WP_286124033.1 DUF4047 domain-containing protein -
  QRE67_RS06240 (QRE67_06235) - 1256866..1257456 (+) 591 WP_286124035.1 CalY family protein -
  QRE67_RS06245 (QRE67_06240) - 1257552..1258187 (+) 636 WP_286124036.1 LPXTG cell wall anchor domain-containing protein -
  QRE67_RS06250 (QRE67_06245) calY 1258774..1259367 (+) 594 WP_286124037.1 biofilm matrix protein CalY -
  QRE67_RS06255 (QRE67_06250) sinR 1259462..1259785 (-) 324 WP_286124038.1 helix-turn-helix domain-containing protein Regulator
  QRE67_RS06260 (QRE67_06255) - 1259867..1259998 (-) 132 WP_286124039.1 anti-repressor SinI family protein -
  QRE67_RS06265 (QRE67_06260) - 1260352..1262742 (+) 2391 WP_286124040.1 immune inhibitor A domain-containing protein -
  QRE67_RS06270 (QRE67_06265) - 1263168..1264535 (+) 1368 WP_286124041.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12405.26 Da        Isoelectric Point: 9.6549

>NTDB_id=846342 QRE67_RS06255 WP_286124038.1 1259462..1259785(-) (sinR) [Bacillus sp. DX3.1]
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQIPVDILLHDETTSENQLDSEWTTLV
KEAMNSGVSKEQFREFLEFTKWKKNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=846342 QRE67_RS06255 WP_286124038.1 1259462..1259785(-) (sinR) [Bacillus sp. DX3.1]
ATGATTGGAGAACGTATAAAACGCCTTCGTCTACAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAAGCGGGTGTCGC
TAAATCTTACATTAGTTCCATCGAACGTAATTTACAAAAAAATCCCTCCATTCAATTTCTCGAAAAGATTGCTAATGTTC
TGCAGATTCCGGTTGATATACTCCTTCATGACGAAACAACATCTGAAAATCAATTAGATTCTGAATGGACAACTCTTGTT
AAAGAAGCGATGAATTCTGGTGTATCAAAAGAACAGTTCCGCGAATTTCTAGAATTTACAAAATGGAAGAAAAACCAGAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-61)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.055

100

0.673