Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QRE67_RS05875 Genome accession   NZ_CP128153
Coordinates   1184755..1186581 (+) Length   608 a.a.
NCBI ID   WP_286123968.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1179755..1191581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS05855 (QRE67_05850) - 1179823..1180497 (-) 675 WP_286125197.1 TerC family protein -
  QRE67_RS05860 (QRE67_05855) mecA 1180834..1181505 (+) 672 WP_286123965.1 adaptor protein MecA Regulator
  QRE67_RS05865 (QRE67_05860) cls 1181589..1183133 (+) 1545 WP_286123966.1 cardiolipin synthase -
  QRE67_RS05870 (QRE67_05865) - 1183308..1184531 (+) 1224 WP_286123967.1 competence protein CoiA family protein -
  QRE67_RS05875 (QRE67_05870) pepF 1184755..1186581 (+) 1827 WP_286123968.1 oligoendopeptidase F Regulator
  QRE67_RS05880 (QRE67_05875) - 1187135..1188028 (-) 894 WP_286123969.1 DsbA family protein -
  QRE67_RS05885 (QRE67_05880) - 1188028..1188426 (-) 399 WP_286123970.1 globin -
  QRE67_RS05890 (QRE67_05885) - 1188664..1189242 (-) 579 WP_286123971.1 CYTH domain-containing protein -
  QRE67_RS05895 (QRE67_05890) - 1189386..1189757 (+) 372 WP_286123972.1 hypothetical protein -
  QRE67_RS05900 (QRE67_05895) - 1189947..1190585 (+) 639 WP_286123973.1 GTP pyrophosphokinase family protein -
  QRE67_RS05905 (QRE67_05900) - 1190604..1191401 (+) 798 WP_286123975.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70170.57 Da        Isoelectric Point: 4.7067

>NTDB_id=846341 QRE67_RS05875 WP_286123968.1 1184755..1186581(+) (pepF) [Bacillus sp. DX3.1]
MADQKTAKTLPARSEIEELNTWRLEDVFYTDEEWEKEFQAVKELLPKLTEFKGKLGDSADALLATLQYEDEVSMRLGKLY
TYAHMRYDQDTANSSYQALNDRATNLYSQASSSMAYIVPEILTISEEALQSFLQENKELKVYEHALEEITRQRPHVLSEA
EEALLAQASEVMSASSSTFGILNNADLKFPSIKDEDGQEVEVTHGRYIQFLESDDPRVRHDAFHAVYETYGNYKNTFAST
LSGAIKRNNFYARVRKYDSARQAALSNNNIPETVYDQLVETVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDILLKSLNVLGDEYVAILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPYIYGDYSIFVAEVASTCNEAILNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHVIHQKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDKEIGIEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGKPAVERYTNEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEDK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=846341 QRE67_RS05875 WP_286123968.1 1184755..1186581(+) (pepF) [Bacillus sp. DX3.1]
ATGGCTGATCAAAAAACAGCAAAAACATTGCCTGCCCGCAGTGAGATTGAAGAATTAAATACATGGCGTTTGGAAGATGT
TTTCTATACGGATGAAGAGTGGGAAAAAGAATTTCAAGCAGTAAAAGAGTTGCTACCAAAGCTGACAGAATTCAAAGGGA
AGCTTGGTGACTCTGCTGATGCATTATTAGCAACATTGCAATATGAAGATGAAGTCTCAATGCGTCTAGGGAAATTATAT
ACATATGCTCATATGCGTTATGACCAAGATACGGCAAACTCTTCCTATCAAGCACTTAATGATCGTGCAACAAACTTGTA
CTCTCAAGCATCAAGCAGTATGGCATATATCGTTCCTGAGATTTTAACGATTTCAGAAGAAGCGTTACAATCGTTCTTAC
AAGAAAATAAAGAATTAAAAGTCTATGAGCATGCGTTAGAAGAAATTACACGTCAGCGTCCACACGTATTGTCAGAAGCA
GAAGAAGCGTTATTAGCGCAAGCATCTGAAGTAATGAGTGCATCAAGTAGTACGTTTGGTATATTAAATAATGCTGATTT
AAAGTTTCCATCTATTAAAGATGAAGATGGACAAGAGGTAGAAGTAACGCATGGTCGCTATATTCAATTTTTAGAAAGTG
ATGATCCTCGTGTTCGTCATGATGCGTTTCATGCTGTATATGAAACGTACGGAAACTATAAAAATACATTTGCAAGTACA
TTGAGTGGTGCGATTAAACGCAACAATTTCTATGCGCGTGTTCGCAAATATGATTCTGCACGCCAAGCGGCATTAAGTAA
TAATAATATTCCTGAAACGGTATATGATCAGCTTGTTGAGACAGTAAATGATAACTTACATTTATTACATCGTTACATTG
ATATTCGCAAACGTGCATTAGGGCTTGATGAGTTACATATGTATGATCTATATACACCGCTTGTACCAGAAGTGAAAATG
AATGTGAAATATGAAGAAGCACAAGATATTCTATTGAAGTCATTGAATGTTCTGGGTGATGAGTATGTTGCAATTCTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATATGAAAATAAAGGGAAACGCAGCGGTGCGTATTCATCTGGTGCATATG
GAACAAATCCATACATTTTAATGAACTGGCATGATAATGTAAACAATTTGTTTACACTTGCTCATGAATTTGGTCATTCT
GTGCATAGTTACTATACAAGAAAAACACAACCATATATATATGGTGACTATTCTATTTTTGTTGCGGAAGTTGCTTCTAC
ATGTAACGAAGCAATTTTAAATGATTACTTATTAAAAACAACAGAAGATAAGAAAGAACGCTTATATTTGTTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCTGAATTTGAGCATGTGATCCATCAAAAAGTACAA
GAAGGACATGCGGTAACACCAGACATGTTAACAGAAATTTATTATGATTTAAATAAAAAATACTTTGGCGATGCTTTAGT
TATCGATAAAGAAATTGGTATAGAGTGGTCTCGTATTCCGCACTTCTATTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTTTATCAAAACAAATTTTAGAAGAAGGAAAACCAGCGGTAGAGCGTTATACTAACGAATTC
TTAAAAGCTGGAAGCTCCGATTATCCAATTGAAGTATTGAAAAAAGCAGGTGTGGATATGGCATCACCAGAACCTGTGAA
AGAAGCACTGCAAGTATTTGAAGAAAAGTTGAATGAATTAGAAGCGCTATTGTTTGAAGATAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.324

97.368

0.48