Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   QRE67_RS05760 Genome accession   NZ_CP128153
Coordinates   1160017..1162617 (+) Length   866 a.a.
NCBI ID   WP_286123945.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 1155017..1167617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS05725 (QRE67_05720) prsA 1155622..1156476 (-) 855 WP_286123938.1 peptidylprolyl isomerase PrsA -
  QRE67_RS05730 (QRE67_05725) - 1156783..1156914 (-) 132 WP_286123939.1 DUF3941 domain-containing protein -
  QRE67_RS05735 (QRE67_05730) - 1157022..1157879 (+) 858 WP_353507054.1 YitT family protein -
  QRE67_RS05740 (QRE67_05735) - 1157916..1158113 (-) 198 WP_286123941.1 DUF3813 domain-containing protein -
  QRE67_RS05745 (QRE67_05740) - 1158114..1158254 (-) 141 WP_286123942.1 competence protein -
  QRE67_RS05750 (QRE67_05745) - 1158356..1159165 (-) 810 WP_286123943.1 Cof-type HAD-IIB family hydrolase -
  QRE67_RS05755 (QRE67_05750) - 1159675..1159854 (+) 180 WP_286123944.1 YjzC family protein -
  QRE67_RS05760 (QRE67_05755) clpC 1160017..1162617 (+) 2601 WP_286123945.1 ATP-dependent chaperone ClpB Regulator
  QRE67_RS05765 (QRE67_05760) - 1162652..1162834 (-) 183 WP_286123946.1 YjzD family protein -
  QRE67_RS05770 (QRE67_05765) - 1162990..1163724 (+) 735 WP_286123947.1 alpha/beta hydrolase -
  QRE67_RS05775 (QRE67_05770) - 1163782..1164642 (+) 861 WP_286123948.1 NAD(P)-dependent oxidoreductase -
  QRE67_RS05780 (QRE67_05775) comZ 1164696..1164869 (+) 174 WP_286123949.1 ComZ family protein Regulator
  QRE67_RS05785 (QRE67_05780) - 1165137..1166069 (+) 933 WP_286123950.1 beta-ketoacyl-ACP synthase III -
  QRE67_RS05790 (QRE67_05785) fabF 1166102..1167340 (+) 1239 WP_286123951.1 beta-ketoacyl-ACP synthase II -

Sequence


Protein


Download         Length: 866 a.a.        Molecular weight: 97613.62 Da        Isoelectric Point: 5.1103

>NTDB_id=846336 QRE67_RS05760 WP_286123945.1 1160017..1162617(+) (clpC) [Bacillus sp. DX3.1]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLRQQDGLAVRIFQKMNVNIEQLTKEVERLLQQKPSVTGSGVE
AGKVYVTNALQQLLVRAEAEAKQLQDEYISVEHLLLALCGEKADVKQLFITFQITKDTLLQSLIEVRGNQRVTSQNPEVT
YEALEKYGRDLVAEVRQGKLDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPSVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLRTLQRELSDLKEVASGMRAQWQKEKEEIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAVEKELREAEEASADNGQDNRLLREEVSEEEIANIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVGLVADAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQIIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSGYLLEGLQEDGSIKEESRDLVMSQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLVDRHIT
VELTEAAKEFVVESGFDPMYGARPLKRYVQRQIETKLARELIAGTITDNSHVVVDVKNAELVVHVQ

Nucleotide


Download         Length: 2601 bp        

>NTDB_id=846336 QRE67_RS05760 WP_286123945.1 1160017..1162617(+) (clpC) [Bacillus sp. DX3.1]
ATGGACCTAAATCAAATGACGACGAAAACACAAGAAGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCATCA
AGAAGTTGATACTGTTCATCTATTGCTCGCATTACTAAGGCAGCAAGATGGATTAGCGGTACGTATTTTTCAAAAAATGA
ATGTAAATATAGAACAGTTAACAAAAGAAGTAGAAAGATTGTTACAACAAAAGCCGTCTGTTACAGGAAGCGGTGTGGAG
GCTGGGAAAGTATACGTGACAAATGCTTTGCAACAATTGCTTGTTAGAGCAGAAGCGGAGGCAAAGCAGTTACAAGATGA
ATATATTTCAGTAGAACATTTGTTACTTGCATTGTGCGGGGAAAAAGCTGATGTTAAACAGCTATTTATAACATTTCAAA
TTACAAAAGATACATTATTACAGTCTTTAATCGAAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGTAACA
TATGAAGCATTAGAAAAATATGGCCGTGATTTAGTGGCGGAAGTAAGACAAGGTAAGCTTGATCCTGTTATTGGCCGGGA
TAGCGAAATTCGCCGTGTCATCCGTATTCTTTCACGTAAAACAAAAAATAACCCTGTTTTGATTGGAGAACCAGGTGTCG
GGAAAACAGCAATTGTCGAAGGATTGGCACAGCGAATTGTACGAAAAGATGTACCGGAAGGTTTAAAAGATAGAACAATT
TTTGCGCTTGATATGAGTGCTCTTGTAGCAGGTGCAAAATTCCGTGGTGAGTTTGAAGAGCGTTTGCAAGCCGTTTTAAA
CGAAATTAAAAAAAGTGAAGGTCGCATTTTATTATTTATCGATGAACTCCATACAATTGTCGGTGCTGGTAAAACAGAGG
GGGCAATGGATGCAGGGAACATGTTAAAACCGATGCTTGCACGTGGCGAACTTCATTGTATCGGTGCAACGACATTAGAT
GAATATCGAAAATATATTGAGAAAGATCCAGCTCTAGAACGTCGTTTCCAACAAGTATTAGCAGAAGAGCCATCAGTGGA
AGATACCATTTCTATTTTACGTGGCTTAAAAGAGCGTTTTGAAATTTATCATGGTGTAAATATTCATGACCGTGCGATTG
TAGCAGCATCTGTGTTATCTGATCGATATATATCTGATCGATTTTTGCCAGATAAAGCCATTGATCTTGTTGATGAAGCA
TGCGCAACGATTCGTACAGAAATTGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTAGAAAT
TGAAGAAGCAGCGCTGGGCAAAGAAACAGACCGGGGCAGCCAAGAGCGCCTGAGAACATTACAGCGTGAATTGTCTGATT
TAAAAGAAGTAGCAAGTGGAATGAGAGCACAGTGGCAAAAAGAAAAAGAAGAAATTCATAAAGTTCGTGATTTACGTGAG
CATCTGGAACGTTTACGTCGTGAGTTAGAAGAAGCCGAAGGAAATTACGATTTAAATAAAGCAGCAGAGCTTCGTCACGG
TAAAATTCCAGCGGTAGAAAAAGAGTTAAGAGAAGCGGAAGAAGCAAGTGCTGATAACGGACAAGATAATCGTCTACTTC
GTGAGGAAGTAAGTGAAGAGGAAATTGCGAATATTGTTTCACGGTGGACTGGTATCCCAGTTGCGAAACTTGTGGAAGGA
GAACGTGAAAAACTGCTTCGTTTAGAGCAAATTTTATCAGAGCGTGTCATTGGACAAGAAGAAGCGGTTGGTCTTGTAGC
AGATGCTGTTCTTCGTGCTCGTGCTGGTATTAAAGATCCGAATCGTCCAATTGGTTCTTTCATTTTCTTAGGACCTACCG
GTGTTGGGAAAACGGAGCTTGCGAAAACATTAGCACAATCTTTATTTGATAGCGAAGAACAAATCATTCGTATTGATATG
TCTGAGTATATGGAAAAACATGCCGTATCTCGTTTAATCGGAGCACCTCCTGGATATGTCGGCTATGAAGAAGGTGGACA
ATTAACAGAAGCAGTACGTCGTAAACCATATTCCGTTATTTTGTTAGACGAAATTGAAAAAGCACATCCGGAAGTATTTA
ACATTTTACTACAAATGTTAGATGACGGTCGTATTACGGACTCACAAGGGCGAACAGTAGATTTTAAAAATACAGTTATT
ATTATGACGTCCAATATTGGTTCAGGGTATTTATTAGAAGGTTTACAAGAAGATGGTTCAATAAAAGAAGAGTCAAGAGA
TCTCGTTATGAGCCAGCTTCGTGGACATTTCCGTCCGGAGTTTTTAAACCGTGTAGATGAGATTATTTTATTTAAACCAC
TTACAACAAATGAAATAAAAGGCATTGTTGATAAAATTGTAAAAGAGTTACAAGGTCGTTTAGTGGACCGCCATATTACA
GTGGAATTAACAGAAGCGGCAAAAGAATTTGTTGTTGAATCTGGTTTTGATCCAATGTACGGAGCACGTCCGTTAAAACG
TTATGTACAGCGTCAAATTGAAACGAAATTAGCAAGAGAGCTTATTGCAGGAACCATTACTGATAATAGTCATGTTGTTG
TTGATGTGAAAAATGCTGAATTAGTTGTTCATGTGCAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

47.543

100

0.48

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

40.252

100

0.405