Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRE67_RS00220 Genome accession   NZ_CP128153
Coordinates   40837..41121 (-) Length   94 a.a.
NCBI ID   WP_286123041.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35837..46121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS00185 (QRE67_00185) tmk 35982..36608 (+) 627 WP_286123034.1 dTMP kinase -
  QRE67_RS00190 (QRE67_00190) holB 36644..37627 (+) 984 WP_286123035.1 DNA polymerase III subunit delta' -
  QRE67_RS00195 (QRE67_00195) - 37632..38459 (+) 828 WP_141523165.1 stage 0 sporulation family protein -
  QRE67_RS00200 (QRE67_00200) yabA 38474..38824 (+) 351 WP_286123037.1 DNA replication initiation control protein YabA -
  QRE67_RS00205 (QRE67_00205) - 38955..39695 (+) 741 WP_286123038.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QRE67_RS00210 (QRE67_00210) - 39682..39972 (+) 291 WP_286123039.1 GIY-YIG nuclease family protein -
  QRE67_RS00215 (QRE67_00215) rsmI 39941..40816 (+) 876 WP_286123040.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QRE67_RS00220 (QRE67_00220) abrB 40837..41121 (-) 285 WP_286123041.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRE67_RS00225 (QRE67_00225) metG 41485..43467 (+) 1983 WP_286123042.1 methionine--tRNA ligase -
  QRE67_RS00230 (QRE67_00230) - 43645..44409 (+) 765 WP_286123043.1 TatD family hydrolase -
  QRE67_RS00235 (QRE67_00235) rnmV 44843..45400 (+) 558 WP_286123044.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10528.31 Da        Isoelectric Point: 5.2088

>NTDB_id=846326 QRE67_RS00220 WP_286123041.1 40837..41121(-) (abrB) [Bacillus sp. DX3.1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDEEKIILKKYKPNMTCQITGEVSDGNLSLAEGKIILSKEGAE
QILNELQQYIQAVK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=846326 QRE67_RS00220 WP_286123041.1 40837..41121(-) (abrB) [Bacillus sp. DX3.1]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTTGTAATTCCGATTGAGTTACGCCGTACATTAGG
TATTGCAGAAAAGGATGCTCTTGAAATTTACGTTGATGAAGAAAAAATCATCCTAAAAAAATATAAACCAAATATGACTT
GCCAAATAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCAGAA
CAAATCTTAAACGAACTTCAACAATATATTCAGGCAGTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.043

100

0.84