Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QRE67_RS00020 Genome accession   NZ_CP128153
Coordinates   3177..4304 (+) Length   375 a.a.
NCBI ID   WP_286123014.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS00005 (QRE67_00005) dnaA 1..1341 (+) 1341 WP_286123011.1 chromosomal replication initiator protein DnaA -
  QRE67_RS00010 (QRE67_00010) dnaN 1520..2665 (+) 1146 WP_286123012.1 DNA polymerase III subunit beta -
  QRE67_RS00015 (QRE67_00015) yaaA 2952..3164 (+) 213 WP_286123013.1 S4 domain-containing protein YaaA -
  QRE67_RS00020 (QRE67_00020) recF 3177..4304 (+) 1128 WP_286123014.1 DNA replication/repair protein RecF Machinery gene
  QRE67_RS00025 (QRE67_00025) gyrB 4343..6265 (+) 1923 WP_286123015.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QRE67_RS00030 (QRE67_00030) gyrA 6344..8812 (+) 2469 WP_286123016.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43482.70 Da        Isoelectric Point: 6.8940

>NTDB_id=846324 QRE67_RS00020 WP_286123014.1 3177..4304(+) (recF) [Bacillus sp. DX3.1]
MYITEIQLKNYRNYEHLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGKIKGRLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHHGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVNEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKQAKTIHVTNGTVDCEIDRR

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=846324 QRE67_RS00020 WP_286123014.1 3177..4304(+) (recF) [Bacillus sp. DX3.1]
TTGTATATTACAGAAATACAATTAAAAAACTATCGCAATTATGAACATCTAGATCTTTCCTTCGAGGATAAAGTCAATGT
AATTATTGGTGAAAATGCGCAAGGGAAAACAAATTTGATGGAAGCTATTTATGTATTAGCGATGGCCAAATCTCATCGAA
CTTCGAATGACCGTGAACTTATCCGATGGGACGAGGATTATGGTAAAATAAAAGGTAGATTACAAAAACGAAATAGCTCC
TTGTCTTTAGAATTAAACATTTCTAAAAAAGGGAAGAAGGCAAAGTTGAATCAACTTGAACAGCAAAAATTGAGCCAATA
TATTGGCGAAATGAATGTTGTTATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTACGAAGACGCT
TTTTGGATATGGAGCTTGGACAAATAGCTCCTGTGTATTTGTATGAATTAAGTCAATATCAAAAAGTGCTCACGCAGCGA
AATCACTTGCTGAAGAAAATGCAAGGGAATAGTAAAAACGAGGAAACAATGCTAGATGTGTTTACACTTCAACTTATTGA
ACATGGTGCGAAAATCCTGCGAAAACGTTTTGAATTTTTGCATTTGCTACAAGAGTGGGCCGCTCCAATTCATCACGGGA
TTAGCAGAGGATTAGAGGAACTAGAAATAGTTTATAAACCAAGCGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACAACCGCACTTT
CCCTAAAGTTAGCTGAAATTGAATTAATTTATTCAGAGGTTAACGAATATCCAATCCTCTTACTAGATGATGTGTTATCA
GAATTAGATGATTATCGTCAATCACATCTGCTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAGCAAGCAAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGACA
GAAGATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.935

98.133

0.667