Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QRY64_RS23810 Genome accession   NZ_CP128152
Coordinates   4139682..4141421 (-) Length   579 a.a.
NCBI ID   WP_286120400.1    Uniprot ID   -
Organism   Bacillus albus strain SXL388     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4134682..4146421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY64_RS23790 (QRY64_23770) - 4135035..4135181 (+) 147 WP_001247671.1 YycC family protein -
  QRY64_RS23795 (QRY64_23775) - 4135370..4136896 (-) 1527 WP_286119912.1 glycosyltransferase family 39 protein -
  QRY64_RS23800 (QRY64_23780) spo0A 4137183..4137977 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  QRY64_RS23805 (QRY64_23785) spoIVB 4138265..4139563 (-) 1299 WP_048531049.1 SpoIVB peptidase -
  QRY64_RS23810 (QRY64_23790) recN 4139682..4141421 (-) 1740 WP_286120400.1 DNA repair protein RecN Machinery gene
  QRY64_RS23815 (QRY64_23795) argR 4141689..4142138 (-) 450 WP_001032581.1 arginine repressor ArgR -
  QRY64_RS23820 (QRY64_23800) - 4142281..4143120 (-) 840 WP_048531053.1 TlyA family RNA methyltransferase -
  QRY64_RS23825 (QRY64_23805) dxs 4143124..4145016 (-) 1893 WP_048531055.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QRY64_RS23830 (QRY64_23810) ispA 4145319..4146209 (-) 891 WP_048531057.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65821.87 Da        Isoelectric Point: 4.7927

>NTDB_id=846305 QRY64_RS23810 WP_286120400.1 4139682..4141421(-) (recN) [Bacillus albus strain SXL388]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLRENLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNVEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=846305 QRY64_RS23810 WP_286120400.1 4139682..4141421(-) (recN) [Bacillus albus strain SXL388]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGGGAAACAGGAGCTGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGTCGTGGTTCAGCGGAAT
TCGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGACTATTTTATGTAGAAGATGATAAGCATCCGTGCATTGAAAAG
GCAGAAGAATTGGACATAGAAATCGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAATGGAAAAAGCGTATG
TCGTGTAAATGGGAAATTAGTCACCCTTAGTATATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACGCAAGACTTAATGAATGAAGAGCGTCACTTATTTATGCTTGATCATTTTGATGGAGATCGTATTGTTAAACAATTG
GATATATATCAAAACGTATACGCTGATTATGAGAAGTTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTATAAAGCATTAGGCGATGCATATCGATCGTTAAGCGCG
GACGGACAAGGATTAGATAATGTAAGAAGCGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTATCAACTAAGAGAAAATCTCGATATGATGG
AATATGATCCGAATCGTTTAGATGAAATCGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTAAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGTGGAAGAGCCTCTTGTGGAGGGAGCACCGGTAAGACTTACAGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACCAATCCAGGCGAACCGTTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCAGTTATTTTTGATGAGGTGGATACTGGTGTAAGT
GGCCGCGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTGCTTTGTATTACGCACTTACC
TCAAGTCGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGAACAATTACGTCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601