Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QRY64_RS02885 Genome accession   NZ_CP128152
Coordinates   97550..98926 (+) Length   458 a.a.
NCBI ID   WP_286120145.1    Uniprot ID   -
Organism   Bacillus albus strain SXL388     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92550..103926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY64_RS02865 (QRY64_02855) ctsR 92743..93204 (+) 462 WP_071757384.1 transcriptional regulator CtsR -
  QRY64_RS02870 (QRY64_02860) - 93378..93926 (+) 549 WP_048526355.1 UvrB/UvrC motif-containing protein -
  QRY64_RS02875 (QRY64_02865) - 93931..94995 (+) 1065 WP_048526356.1 protein arginine kinase -
  QRY64_RS02880 (QRY64_02870) clpC 95018..97453 (+) 2436 WP_000971179.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  QRY64_RS02885 (QRY64_02875) radA 97550..98926 (+) 1377 WP_286120145.1 DNA repair protein RadA Machinery gene
  QRY64_RS02890 (QRY64_02880) disA 98930..100003 (+) 1074 WP_048526357.1 DNA integrity scanning diadenylate cyclase DisA -
  QRY64_RS02895 (QRY64_02885) - 100164..101273 (+) 1110 WP_048526358.1 PIN/TRAM domain-containing protein -
  QRY64_RS02900 (QRY64_02890) ispD 101290..101970 (+) 681 WP_286120146.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QRY64_RS02905 (QRY64_02895) ispF 102086..102562 (+) 477 WP_048526360.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49828.42 Da        Isoelectric Point: 7.1421

>NTDB_id=846277 QRY64_RS02885 WP_286120145.1 97550..98926(+) (radA) [Bacillus albus strain SXL388]
MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNTLVEEMEPVVSSRRLNYANAIQSEVTKPRRLTEVETKSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIA
AHIEEVNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLT
GEIRRVSRIEQRIQEAAKLGFQRAIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=846277 QRY64_RS02885 WP_286120145.1 97550..98926(+) (radA) [Bacillus albus strain SXL388]
ATGGCTAAAAAGAAAACAAAATTCACATGTCAAGAGTGTGGGTATCAGTCACCAAAATATATGGGGAAATGCCCTGGGTG
TGGTCAATGGAATACGCTTGTTGAAGAGATGGAACCAGTTGTATCATCAAGGCGCCTTAATTATGCCAATGCGATTCAAT
CAGAAGTAACAAAACCAAGACGTCTAACAGAAGTAGAAACAAAGTCTGAGGCGCGTATTGAAACGAAATTTCAAGAATTT
AACCGCGTACTTGGTGGCGGGATTGTAGATGGGTCCTTAGTACTTATTGGTGGTGACCCTGGGATTGGAAAATCAACGTT
ACTATTACAAATATCATCGCAATTAGCAGATTCTTCATATGATGTACTATATATATCGGGTGAAGAATCAGCAAAACAGA
TTAAACTGCGTGCGGACCGTTTACATGTAAATGGTAGCAATCTATTTGTTGTATCAGAGACGGATTTGCAGCGGATTGCA
GCACACATTGAAGAAGTGAATCCAGCCTTTGTTGTTATTGATTCTATCCAAACGATACATTTACCTGAGGTAACGTCAGC
ACCAGGAAGTGTGGCGCAAGTACGTGAATGTACAGCGGAATTAATGAAACTTGCAAAAACGAAAGGGATCCCTATTTTTA
TCGTTGGACATGTGACAAAAGAGGGGGCAATTGCAGGGCCTCGTATGTTAGAACATATGGTCGATGCAGTTCTTTATTTT
GAAGGAGACCGCCATCATACATATCGTATTTTGCGAGCGGTGAAGAATCGTTTTGGTTCCACGAATGAAATGGGTATTTT
TGAAATGAAAGAACTTGGCCTTGCGGAAGTATTAAATCCTTCTGAAATTTTCCTTGAGGAAAGACCAGTTGGGGTTGCAG
GGTCAACGGTGGTTGCCTCAATGGAAGGAACACGACCAGTTTTAGTAGAAATACAAGCATTAATCTCCCCTACTAGTTTT
GGAAACCCTCGAAGAATGGCAACGGGAATTGACCATAACCGTGTATCGCTTATTATGGCAGTGTTAGAAAAAAGAACAGG
TTTATTATTGCAAAACCAAGACGCATATTTAAAAGTAGCAGGTGGTCTGAAGTTAGATGAACCAGCAATTGATTTAGCTG
TGGCTTTAAGTATAGCTTCAAGTTTTAGAGATAAATCTACGGCACCAACCGATGCAGTAATAGGAGAAGTAGGATTAACT
GGAGAAATAAGAAGAGTGTCAAGAATTGAACAACGTATACAAGAAGCAGCTAAATTAGGATTTCAACGCGCTATTATTCC
TAGAAAAAATTTAGGGGGATGGACAATTCCTGATGGGATTGAAGTAGTAGGTGTATCCAATTTAGGAGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

AAA domain (AAA_25)

(60-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.51

100

0.747
  radA Streptococcus pneumoniae Rx1

64.018

98.908

0.633
  radA Streptococcus pneumoniae D39

64.018

98.908

0.633
  radA Streptococcus pneumoniae R6

64.018

98.908

0.633
  radA Streptococcus pneumoniae TIGR4

64.018

98.908

0.633
  radA Streptococcus mitis SK321

64.018

98.908

0.633
  radA Streptococcus mitis NCTC 12261

63.797

98.908

0.631