Detailed information NTG0084627

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QMG68_RS24555
• Genome accession: NZ_AP027188
• Coordinates: 4723532..4724557 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain PV0838
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4718532..4729557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMG68_RS24545 (PV0838_4725)	rpmE	4720763..4720975 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
QMG68_RS24550 (PV0838_4726)	priA	4721178..4723376 (+)	2199	WP_001341957.1	primosomal protein N'	Machinery gene
QMG68_RS24555 (PV0838_4727)	cytR	4723532..4724557 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
QMG68_RS24560 (PV0838_4728)	ftsN	4724649..4725608 (+)	960	WP_000068834.1	cell division protein FtsN	-
QMG68_RS24565 (PV0838_4729)	hslV	4725701..4726231 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
QMG68_RS24570 (PV0838_4730)	hslU	4726241..4727572 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
QMG68_RS24575 (PV0838_4731)	menA	4727639..4728565 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
QMG68_RS24580 (PV0838_4732)	rraA	4728658..4729143 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
QMG68_RS24585 (PV0838_4733)	zapB	4729228..4729473 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=84627 QMG68_RS24555 WP_000644904.1 4723532..4724557(+) (cytR) [Escherichia coli strain PV0838]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=84627 QMG68_RS24555 WP_000644904.1 4723532..4724557(+) (cytR) [Escherichia coli strain PV0838]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628