Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   QRE62_RS23740 Genome accession   NZ_CP128149
Coordinates   3947175..3947633 (+) Length   152 a.a.
NCBI ID   WP_199662410.1    Uniprot ID   -
Organism   Bacillus mycoides strain SIN3.2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3942175..3952633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE62_RS23725 (QRE62_23720) - 3942828..3943076 (+) 249 WP_286126152.1 hypothetical protein -
  QRE62_RS23730 (QRE62_23725) - 3943243..3945350 (-) 2108 Protein_3902 polyphosphate kinase -
  QRE62_RS23735 (QRE62_23730) - 3945459..3947033 (-) 1575 WP_044442827.1 Ppx/GppA family phosphatase -
  QRE62_RS23740 (QRE62_23735) kre 3947175..3947633 (+) 459 WP_199662410.1 YkyB family protein Regulator
  QRE62_RS23745 (QRE62_23740) - 3947666..3948328 (-) 663 WP_002014826.1 YkyA family protein -
  QRE62_RS23750 (QRE62_23745) - 3948879..3949532 (-) 654 WP_002033822.1 diguanylate cyclase -
  QRE62_RS23755 (QRE62_23750) - 3949695..3949928 (+) 234 WP_002014824.1 phage holin -
  QRE62_RS23760 (QRE62_23755) - 3949960..3950460 (-) 501 WP_002033821.1 hypothetical protein -
  QRE62_RS23765 (QRE62_23760) - 3951013..3952554 (+) 1542 WP_002014821.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17813.56 Da        Isoelectric Point: 10.6793

>NTDB_id=846252 QRE62_RS23740 WP_199662410.1 3947175..3947633(+) (kre) [Bacillus mycoides strain SIN3.2]
MKPSQPQSPLHNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKDDFRTLPHLGHLESFYRNPKTTLSLTIAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=846252 QRE62_RS23740 WP_199662410.1 3947175..3947633(+) (kre) [Bacillus mycoides strain SIN3.2]
ATGAAACCTTCACAACCACAATCTCCATTGCATAATCAACATTCTATTAATAGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAACCCTAAGTACTTATATTGGTTAAAAAAGACTGCTTTAGAACGCTTAATTACTGAAA
AAAAGGCTATCAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGTCAACAACAATCCGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATCCCTCCTACGAAAGATGATTTTCGCACCCTACCGCATCTTGGTCACCTTGAATCCTTCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAATAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AGGAAAAAAAATTAAGCGAACCAGTTCCATGGTATAGCCGTACCTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

62.931

76.316

0.48