Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRE62_RS14005 Genome accession   NZ_CP128149
Coordinates   2023394..2023681 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain SIN3.2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2018394..2028681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE62_RS13985 (QRE62_13975) - 2019577..2019777 (+) 201 WP_002141377.1 DUF4083 domain-containing protein -
  QRE62_RS13990 (QRE62_13980) - 2019805..2020266 (+) 462 WP_002141378.1 NUDIX hydrolase -
  QRE62_RS13995 (QRE62_13985) nadE 2020311..2021129 (-) 819 WP_002031433.1 ammonia-dependent NAD(+) synthetase -
  QRE62_RS14000 (QRE62_13990) - 2021394..2023274 (+) 1881 WP_113708756.1 ABC transporter permease -
  QRE62_RS14005 (QRE62_13995) abrB 2023394..2023681 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRE62_RS14010 (QRE62_14000) - 2024017..2024967 (+) 951 WP_286126630.1 serine protease -
  QRE62_RS14015 (QRE62_14005) - 2025008..2025316 (-) 309 WP_113708758.1 helix-turn-helix transcriptional regulator -
  QRE62_RS14020 (QRE62_14010) - 2025424..2026359 (+) 936 WP_286126632.1 aldo/keto reductase -
  QRE62_RS14025 (QRE62_14015) - 2026409..2026612 (+) 204 WP_002012406.1 hypothetical protein -
  QRE62_RS14030 (QRE62_14020) - 2026643..2026867 (-) 225 WP_002012407.1 hypothetical protein -
  QRE62_RS14035 (QRE62_14025) - 2026952..2027299 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -
  QRE62_RS14040 (QRE62_14030) - 2027496..2028022 (+) 527 Protein_1958 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=846246 QRE62_RS14005 WP_002012401.1 2023394..2023681(+) (abrB) [Bacillus mycoides strain SIN3.2]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=846246 QRE62_RS14005 WP_002012401.1 2023394..2023681(+) (abrB) [Bacillus mycoides strain SIN3.2]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558