Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QRE62_RS10555 Genome accession   NZ_CP128149
Coordinates   1337631..1337954 (-) Length   107 a.a.
NCBI ID   WP_002188849.1    Uniprot ID   -
Organism   Bacillus mycoides strain SIN3.2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1332631..1342954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE62_RS10530 (QRE62_10520) - 1332872..1334158 (+) 1287 WP_002126097.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QRE62_RS10535 (QRE62_10525) - 1334355..1334924 (+) 570 WP_002064334.1 signal peptidase I SipW -
  QRE62_RS10540 (QRE62_10530) - 1335001..1335588 (+) 588 WP_000172837.1 CalY family protein -
  QRE62_RS10545 (QRE62_10535) - 1335750..1336511 (+) 762 WP_144512565.1 DUF4047 domain-containing protein -
  QRE62_RS10550 (QRE62_10540) calY 1336955..1337548 (+) 594 WP_113710098.1 biofilm matrix protein CalY -
  QRE62_RS10555 (QRE62_10545) sinR 1337631..1337954 (-) 324 WP_002188849.1 helix-turn-helix domain-containing protein Regulator
  QRE62_RS10560 (QRE62_10550) - 1338034..1338168 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  QRE62_RS10565 (QRE62_10555) inhA1 1338511..1340898 (+) 2388 WP_002188852.1 M6 family metalloprotease immune inhibitor InhA1 -
  QRE62_RS10570 (QRE62_10560) - 1341069..1342436 (+) 1368 WP_113710100.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12274.04 Da        Isoelectric Point: 7.2050

>NTDB_id=846243 QRE62_RS10555 WP_002188849.1 1337631..1337954(-) (sinR) [Bacillus mycoides strain SIN3.2]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=846243 QRE62_RS10555 WP_002188849.1 1337631..1337954(-) (sinR) [Bacillus mycoides strain SIN3.2]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCTGGTGTCTCAAAAGAACAGTTCCGTGAATTTCTAGAATTTACACAGTGGAAACAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692