Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRE62_RS03885 Genome accession   NZ_CP128149
Coordinates   40496..40780 (-) Length   94 a.a.
NCBI ID   WP_000843037.1    Uniprot ID   A0A366FUU6
Organism   Bacillus mycoides strain SIN3.2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35496..45780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE62_RS03850 (QRE62_03840) tmk 35650..36276 (+) 627 WP_002009634.1 dTMP kinase -
  QRE62_RS03855 (QRE62_03845) holB 36312..37295 (+) 984 WP_002009636.1 DNA polymerase III subunit delta' -
  QRE62_RS03860 (QRE62_03850) - 37301..38128 (+) 828 WP_002009637.1 stage 0 sporulation family protein -
  QRE62_RS03865 (QRE62_03855) yabA 38143..38493 (+) 351 WP_002009639.1 DNA replication initiation control protein YabA -
  QRE62_RS03870 (QRE62_03860) - 38614..39354 (+) 741 WP_113710298.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QRE62_RS03875 (QRE62_03865) - 39341..39631 (+) 291 WP_113710297.1 GIY-YIG nuclease family protein -
  QRE62_RS03880 (QRE62_03870) rsmI 39600..40475 (+) 876 WP_113710296.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QRE62_RS03885 (QRE62_03875) abrB 40496..40780 (-) 285 WP_000843037.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRE62_RS03890 (QRE62_03880) metG 41273..43282 (+) 2010 WP_113710295.1 methionine--tRNA ligase -
  QRE62_RS03895 (QRE62_03885) - 43448..44215 (+) 768 WP_002009645.1 TatD family hydrolase -
  QRE62_RS03900 (QRE62_03890) rnmV 44476..45033 (+) 558 WP_002029323.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10476.14 Da        Isoelectric Point: 4.7174

>NTDB_id=846227 QRE62_RS03885 WP_000843037.1 40496..40780(-) (abrB) [Bacillus mycoides strain SIN3.2]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QVLNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=846227 QRE62_RS03885 WP_000843037.1 40496..40780(-) (abrB) [Bacillus mycoides strain SIN3.2]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGATGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGTAAAGAAGGCGCTGAA
CAAGTCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366FUU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.043

100

0.84