Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QRE64_RS25900 Genome accession   NZ_CP128137
Coordinates   4986211..4987560 (-) Length   449 a.a.
NCBI ID   WP_282914650.1    Uniprot ID   -
Organism   Bacillus mycoides strain SIN3.1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4981211..4992560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE64_RS25870 (QRE64_25810) - 4981908..4982602 (-) 695 Protein_5036 hypothetical protein -
  QRE64_RS25875 (QRE64_25815) - 4982589..4983373 (-) 785 Protein_5037 hypothetical protein -
  QRE64_RS25880 (QRE64_25820) - 4983405..4983977 (-) 573 WP_113708881.1 hypothetical protein -
  QRE64_RS25885 (QRE64_25825) raiA 4984319..4984861 (-) 543 WP_002016135.1 ribosome-associated translation inhibitor RaiA -
  QRE64_RS25890 (QRE64_25830) cspC 4985183..4985380 (-) 198 WP_001990088.1 cold shock protein CspC -
  QRE64_RS25895 (QRE64_25835) - 4985507..4986211 (-) 705 WP_113708880.1 ComF family protein -
  QRE64_RS25900 (QRE64_25840) comFA 4986211..4987560 (-) 1350 WP_282914650.1 ATP-dependent helicase ComFA Machinery gene
  QRE64_RS25905 (QRE64_25845) - 4987691..4989037 (-) 1347 WP_113708878.1 C40 family peptidase -
  QRE64_RS25910 (QRE64_25850) - 4989271..4989585 (-) 315 WP_002089608.1 helix-turn-helix domain-containing protein -
  QRE64_RS25915 (QRE64_25855) - 4989748..4990590 (-) 843 WP_002016143.1 DegV family protein -
  QRE64_RS25920 (QRE64_25860) - 4990829..4991464 (+) 636 WP_061689030.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50921.37 Da        Isoelectric Point: 9.5162

>NTDB_id=846219 QRE64_RS25900 WP_282914650.1 4986211..4987560(-) (comFA) [Bacillus mycoides strain SIN3.1]
MLAGRQLLLEELSADLQNKLDHLKRNRDVVCVQGVIKKSSKYMCQRCGNIEQRLFVSLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGVLSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGGLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLQYAVNEAM
KEKAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLIRKKIPRTLLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTIKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPYGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=846219 QRE64_RS25900 WP_282914650.1 4986211..4987560(-) (comFA) [Bacillus mycoides strain SIN3.1]
ATGTTAGCTGGTAGACAGTTACTGTTAGAAGAACTCTCTGCAGATTTGCAGAATAAATTGGATCATCTGAAAAGGAATCG
AGACGTCGTTTGTGTACAAGGGGTAATTAAGAAGTCTTCAAAATATATGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGTATCATTGCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCGTTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGGGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCAGTATGCAGTAAACGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGTCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGCACTTTATTACAATGGTTAAATCTGTACCTATCGAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCAAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AACGAGGAGTAACTATTAAAAATTTACAAGTTGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGTATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-409)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.887

98.218

0.49
  comFA Latilactobacillus sakei subsp. sakei 23K

41.206

88.641

0.365