Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QRE63_RS21565 Genome accession   NZ_CP128129
Coordinates   4171686..4172480 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain SIN2.2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4166686..4177480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE63_RS21535 (QRE63_21595) - 4167213..4167446 (+) 234 WP_001190193.1 DUF2627 domain-containing protein -
  QRE63_RS21540 (QRE63_21600) - 4167498..4168226 (-) 729 WP_113709275.1 glycerophosphodiester phosphodiesterase -
  QRE63_RS21545 (QRE63_21605) - 4168277..4168423 (+) 147 WP_001247671.1 YycC family protein -
  QRE63_RS21550 (QRE63_21610) - 4168438..4168665 (-) 228 Protein_4199 YrhA family protein -
  QRE63_RS21555 (QRE63_21615) - 4168870..4169343 (-) 474 WP_033731242.1 SMI1/KNR4 family protein -
  QRE63_RS21560 (QRE63_21620) - 4169367..4170938 (-) 1572 WP_113709276.1 T7SS effector LXG polymorphic toxin -
  QRE63_RS21565 (QRE63_21625) spo0A 4171686..4172480 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  QRE63_RS21570 (QRE63_21630) spoIVB 4172767..4174059 (-) 1293 WP_113709277.1 SpoIVB peptidase -
  QRE63_RS21575 (QRE63_21635) recN 4174179..4175918 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  QRE63_RS21580 (QRE63_21640) argR 4176189..4176638 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=846159 QRE63_RS21565 WP_002015081.1 4171686..4172480(-) (spo0A) [Bacillus mycoides strain SIN2.2]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=846159 QRE63_RS21565 WP_002015081.1 4171686..4172480(-) (spo0A) [Bacillus mycoides strain SIN2.2]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATCGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818