Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QRE63_RS06820 Genome accession   NZ_CP128129
Coordinates   1320721..1321044 (-) Length   107 a.a.
NCBI ID   WP_113710099.1    Uniprot ID   A0A328KV13
Organism   Bacillus mycoides strain SIN2.2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1315721..1326044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE63_RS06795 (QRE63_06815) - 1316062..1316631 (+) 570 WP_113708992.1 signal peptidase I SipW -
  QRE63_RS06800 (QRE63_06820) - 1316698..1317285 (+) 588 WP_000172837.1 CalY family protein -
  QRE63_RS06810 (QRE63_06830) - 1318768..1319601 (+) 834 WP_002168858.1 DUF4047 domain-containing protein -
  QRE63_RS06815 (QRE63_06835) calY 1320045..1320638 (+) 594 WP_113710098.1 biofilm matrix protein CalY -
  QRE63_RS06820 (QRE63_06840) sinR 1320721..1321044 (-) 324 WP_113710099.1 helix-turn-helix domain-containing protein Regulator
  QRE63_RS06825 (QRE63_06845) - 1321124..1321258 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  QRE63_RS06830 (QRE63_06850) inhA1 1321601..1323988 (+) 2388 WP_002188852.1 M6 family metalloprotease immune inhibitor InhA1 -
  QRE63_RS06835 (QRE63_06855) - 1324159..1325526 (+) 1368 WP_113710100.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12305.05 Da        Isoelectric Point: 7.2050

>NTDB_id=846147 QRE63_RS06820 WP_113710099.1 1320721..1321044(-) (sinR) [Bacillus mycoides strain SIN2.2]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIQVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=846147 QRE63_RS06820 WP_113710099.1 1320721..1321044(-) (sinR) [Bacillus mycoides strain SIN2.2]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCAAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCTGGTGTCTCAAAAGAACAGTTCCGTGAATTTCTAGAATTTACACAGTGGAAACAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A328KV13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692