Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QRD90_RS25200 Genome accession   NZ_CP128118
Coordinates   5131818..5132768 (-) Length   316 a.a.
NCBI ID   WP_048688135.1    Uniprot ID   A0A9X9EQY9
Organism   Peribacillus frigoritolerans strain LN4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5126818..5137768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD90_RS25185 (QRD90_25165) - 5128970..5129917 (-) 948 WP_286128905.1 siderophore ABC transporter substrate-binding protein -
  QRD90_RS25190 (QRD90_25170) - 5130126..5130884 (-) 759 WP_034310071.1 ABC transporter ATP-binding protein -
  QRD90_RS25195 (QRD90_25175) - 5130878..5131825 (-) 948 WP_127777704.1 iron chelate uptake ABC transporter family permease subunit -
  QRD90_RS25200 (QRD90_25180) ceuB 5131818..5132768 (-) 951 WP_048688135.1 ABC transporter permease Machinery gene
  QRD90_RS25205 (QRD90_25185) - 5133034..5133375 (+) 342 WP_231892147.1 DUF1450 domain-containing protein -
  QRD90_RS25210 (QRD90_25190) - 5134127..5134348 (-) 222 WP_252296876.1 HD domain-containing protein -
  QRD90_RS25215 (QRD90_25195) - 5135702..5136391 (+) 690 WP_252296878.1 WxL domain-containing protein -
  QRD90_RS25220 (QRD90_25200) - 5136420..5137115 (+) 696 WP_127777700.1 WxL domain-containing protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34907.25 Da        Isoelectric Point: 9.6490

>NTDB_id=846114 QRD90_RS25200 WP_048688135.1 5131818..5132768(-) (ceuB) [Peribacillus frigoritolerans strain LN4]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLNLSDDKVQIMLQSRFPRMVTIVIAGIVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYLSIPLVILAYFFANKFTVAGMGEEFAINLGLNYKLIVNFGLIIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRILIYPFEIPIGLVVGVIGSAVFIYLILRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=846114 QRD90_RS25200 WP_048688135.1 5131818..5132768(-) (ceuB) [Peribacillus frigoritolerans strain LN4]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTTTATCATTTACGTCATTATTCATTGGTGTAAAAGATATTACCCC
CCTGGATTTATTGAATCTAAGTGATGATAAAGTGCAAATCATGCTGCAAAGCCGTTTCCCTAGAATGGTGACCATAGTCA
TTGCCGGTATTGTGATGAGTATAAGCGGTCTGATCATGCAGCAATTGAGCCGCAATAAATTTGTATCCCCGACGACTGCC
GGTACCATGGACTCTGCAAGGCTGGGACTTCTTCTTGCCATTATCATTTTTCCATCGGCAGCACTTATTGAGAAAATGGC
ATTCGCTTTCATATTCGCTTTGGCAGGTACATTCTTGTTCATGAAAATTCTTGATCAAGTGAAATATAAGGATACGATCT
TCATTCCATTGGTTGGTTTGATGTTTGGTAATATCGTAGGATCGATTTCGACTTTCTTTGCCTATAAATATGATTTGATT
CAAAGCCTCAACACATGGATGAATGGTGATTTCTCGATGATCATGTCGGGAAGGTACGAACTTATATATCTAAGTATCCC
GCTAGTCATTCTCGCATACTTCTTTGCCAATAAATTCACTGTGGCAGGGATGGGTGAGGAGTTTGCTATCAATCTAGGAC
TCAATTATAAGCTTATAGTCAATTTTGGATTGATCATCGTGGCATTATCCTCCACTGTCGTTTTGTTAACGGTGGGAACG
ATTCCTTTCATAGGATTGATCGTACCGAATATTGTATCCCTTTACCTTGGTGACAATTTGAAAAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCAGTCTTCCTATTGATCTGCGATATTCTGGGCAGGATCCTCATATATCCATTTGAAATCCCGATCG
GACTCGTGGTTGGTGTAATAGGAAGCGCCGTATTTATCTATCTGATACTGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.316

100

0.503