Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QRD90_RS06400 Genome accession   NZ_CP128118
Coordinates   1312313..1314130 (+) Length   605 a.a.
NCBI ID   WP_252297484.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LN4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307313..1319130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD90_RS06380 (QRD90_06385) spxA 1307683..1308078 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  QRD90_RS06385 (QRD90_06390) mecA 1308573..1309241 (+) 669 WP_034314498.1 adaptor protein MecA -
  QRD90_RS06390 (QRD90_06395) cls 1309331..1310839 (+) 1509 WP_252297483.1 cardiolipin synthase -
  QRD90_RS06395 (QRD90_06400) - 1310937..1312145 (+) 1209 WP_164855022.1 competence protein CoiA family protein -
  QRD90_RS06400 (QRD90_06405) pepF 1312313..1314130 (+) 1818 WP_252297484.1 oligoendopeptidase F Regulator
  QRD90_RS06405 (QRD90_06410) - 1315052..1315918 (-) 867 WP_252298114.1 ClpXP adapter SpxH family protein -
  QRD90_RS06410 (QRD90_06415) - 1315942..1316346 (-) 405 WP_053534150.1 globin -
  QRD90_RS06415 (QRD90_06420) - 1316580..1317238 (-) 659 Protein_1195 lytic transglycosylase domain-containing protein -
  QRD90_RS06420 (QRD90_06425) - 1317270..1317848 (-) 579 WP_053534152.1 CYTH domain-containing protein -
  QRD90_RS06425 (QRD90_06430) - 1318168..1318788 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69882.29 Da        Isoelectric Point: 4.7430

>NTDB_id=846088 QRD90_RS06400 WP_252297484.1 1312313..1314130(+) (pepF) [Peribacillus frigoritolerans strain LN4]
MAQETKTNTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLELDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKSQ
NGEALTANMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=846088 QRD90_RS06400 WP_252297484.1 1312313..1314130(+) (pepF) [Peribacillus frigoritolerans strain LN4]
ATGGCACAGGAAACAAAAACGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACGTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAGGAAGACCTCAAGAAAGCAGAGGCGCATAAAGGGA
CATTGGGAGAAAGCGCAGAAAAGTTATTTGCGGCCCTCCAACTTCAAGATGAGGTTTTCGAGAAGCTGGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCATTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCACAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGACGAAAGTAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGAATTGAAATTATATAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCCTATCAGCAGAG
CAGGAAGAACTATTGGCGCAGGCATCAGAAGTACTCGATGCATCGGGCAATACTTTCGGTATGCTTAACAATGCCGATCT
TAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGAAGGTATATCAGATTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTACGGGGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACCGTATACGATAATCTCGTTAAAACGGTCAACGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAAGTACTGGAATTAGATGAACTTCATATGTATGATCTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTAGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCTTCGGGTACATACG
GGACGAACCCTTATATTCTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAACATCAGCCATATCCATACGGGAATTATTCGATATTTGTAGCGGAAGTTGCATCGAC
TTGTAATGAAAACCTGTTGAATGATTATTTACTGAATTCAATCGAAGATGAAAAGAAACGCATCTATTTACTGAACCATT
ACCTGGAAGGTTTCCGTGGCACATTGTTCCGACAAACGATGTTTGCAGAGTTTGAACATACCATTCATTTAAAGTCTCAA
AATGGGGAAGCATTGACGGCGAATATGCTTACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGCGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCTCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACTG
GAATCAGTGCAGCAACTGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCTTG
AAATCAGGAAGTTCCGATTATCCGATTGAAGTACTCAAAAAGGCCGGCGTAGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAAGAGAAATTAAATGAGTTGGAAGAACTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.505

98.182

0.496