Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QRD90_RS00570 Genome accession   NZ_CP128118
Coordinates   100478..101866 (+) Length   462 a.a.
NCBI ID   WP_053537036.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LN4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 95478..106866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD90_RS00550 (QRD90_00550) - 95601..96062 (+) 462 WP_034305095.1 CtsR family transcriptional regulator -
  QRD90_RS00555 (QRD90_00555) - 96084..96635 (+) 552 WP_127777542.1 UvrB/UvrC motif-containing protein -
  QRD90_RS00560 (QRD90_00560) - 96632..97708 (+) 1077 WP_053537034.1 protein arginine kinase -
  QRD90_RS00565 (QRD90_00565) clpC 97838..100279 (+) 2442 WP_252297031.1 ATP-dependent protease ATP-binding subunit ClpC -
  QRD90_RS00570 (QRD90_00570) radA 100478..101866 (+) 1389 WP_053537036.1 DNA repair protein RadA Machinery gene
  QRD90_RS00575 (QRD90_00575) disA 101869..102942 (+) 1074 WP_034305085.1 DNA integrity scanning diadenylate cyclase DisA -
  QRD90_RS00580 (QRD90_00580) - 103169..104248 (+) 1080 WP_053537037.1 PIN/TRAM domain-containing protein -
  QRD90_RS00585 (QRD90_00585) ispD 104270..104959 (+) 690 WP_252297032.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QRD90_RS00590 (QRD90_00590) ispF 104974..105453 (+) 480 WP_034305078.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50244.91 Da        Isoelectric Point: 8.2388

>NTDB_id=846078 QRD90_RS00570 WP_053537036.1 100478..101866(+) (radA) [Peribacillus frigoritolerans strain LN4]
MAVKKKTKFMCQSCGYESAKWMGKCPGCGEWNKMVEETEIVKPARKGAFTHSEVRVSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYSETDM
DYIQQAITDVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPADCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKIIGVSSVSEALKQSLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=846078 QRD90_RS00570 WP_053537036.1 100478..101866(+) (radA) [Peribacillus frigoritolerans strain LN4]
ATGGCTGTAAAAAAGAAAACAAAATTTATGTGTCAGTCTTGTGGGTATGAGTCCGCGAAATGGATGGGGAAATGCCCAGG
CTGCGGTGAATGGAACAAAATGGTCGAGGAAACCGAAATCGTTAAACCTGCAAGAAAAGGAGCCTTTACCCATTCAGAGG
TTAGAGTTTCCGGGGAACGGGAGAAGGCAGCACCCATAACGACTATTCAATCAGAAAAAGAACCACGCATTAAGACGGAT
CTAATGGAATTGAATCGTGCTCTTGGGGGCGGGATCGTGCAGGGATCACTTGTATTGATCGGAGGGGACCCGGGTATCGG
TAAGTCCACCCTGCTTCTACAGGTATCATCCCAATTGGCGCATAAACAGAAAAAAGTGCTTTATATATCAGGTGAAGAAT
CAGTCAAGCAGACCAAATTGAGAGCGGACCGGCTTGGGACCATGTCGGAAAATCTATTCGTTTATTCTGAAACAGATATG
GACTATATCCAACAGGCAATTACAGACGTTAAACCGGATTTGGTCATTATTGACTCGATTCAAACGGTTTACCATTCGGA
GGTTACATCTGCCCCGGGAAGCGTTTCACAAGTGAGGGAATGCACAGCCTCACTCATGCGCATTGCTAAAACGAACGGGA
TCGCGATTTTTATCGTCGGTCACGTTACAAAAGAAGGGGCCATTGCGGGACCACGGCTACTTGAGCACATGGTTGATACC
GTTTTATATTTTGAAGGGGAAAGACACCATACATATCGAATTATACGTGCGGTTAAAAATCGCTTTGGTTCGACGAATGA
GATGGGTATTTTTGAAATGAAAGAACATGGATTGGAAGAGGTGGCGAATCCATCGGAAATTTTCCTTGAAGAACGGTCGC
AAGGAGCTTCGGGGTCCACAGTCGTCGCATCCATGGAGGGCACAAGGCCGGTGCTTGTTGAAATTCAAGCATTGATTTCT
CCTACGAGTTTTGGCAATCCGAGGCGGATGGCCACGGGAATTGACCACAATCGAGTTTCGCTTTTAATGGCTGTCCTGGA
AAAGAGAGTGGGCTTGCTGCTCCAAAACCAAGATGCGTATTTAAAGGTTGCTGGCGGTGTCAAGCTGGATGAACCGGCAA
TTGACCTCGCTGTCGCAATAAGCATTGCATCAAGCTTCCGTGATAAACCAACAAACCCTGCCGATTGCATCATTGGTGAA
GTAGGGCTGACTGGTGAAGTGAGAAGGGTGTCACGAATTGAACAAAGGGTGCAGGAAGCAGCGAAATTAGGGTTTGAGCG
GGTTATCATACCGGCTAATAATATAGGAGGGTGGACCGCGCCGAAAGGTATTAAGATCATTGGTGTTTCATCGGTTTCGG
AGGCTCTTAAACAATCGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.826

99.567

0.775
  radA Streptococcus mitis NCTC 12261

61.978

98.485

0.61
  radA Streptococcus mitis SK321

61.758

98.485

0.608
  radA Streptococcus pneumoniae TIGR4

61.538

98.485

0.606
  radA Streptococcus pneumoniae R6

61.538

98.485

0.606
  radA Streptococcus pneumoniae Rx1

61.538

98.485

0.606
  radA Streptococcus pneumoniae D39

61.538

98.485

0.606