Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QMG68_RS19895 Genome accession   NZ_AP027188
Coordinates   3765598..3766113 (-) Length   171 a.a.
NCBI ID   WP_001130220.1    Uniprot ID   -
Organism   Escherichia coli strain PV0838     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3760598..3771113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG68_RS19870 (PV0838_3810) ygaZ 3760997..3761734 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  QMG68_RS19875 (PV0838_3811) ygaH 3761724..3762059 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QMG68_RS19880 (PV0838_3812) emrR 3762150..3762680 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QMG68_RS19885 (PV0838_3813) emrA 3762807..3763979 (+) 1173 WP_001448625.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QMG68_RS19890 (PV0838_3814) emrB 3763996..3765534 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QMG68_RS19895 (PV0838_3815) luxS 3765598..3766113 (-) 516 WP_001130220.1 S-ribosylhomocysteine lyase Regulator
  QMG68_RS19900 (PV0838_3816) gshA 3766263..3767819 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  QMG68_RS19905 (PV0838_3817) yqaA 3767892..3768320 (-) 429 WP_001287457.1 YqaA family protein -
  QMG68_RS19910 (PV0838_3818) yqaB 3768317..3768883 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QMG68_RS19940 (PV0838_3819) csrA 3770208..3770393 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19460.29 Da        Isoelectric Point: 5.2597

>NTDB_id=84607 QMG68_RS19895 WP_001130220.1 3765598..3766113(-) (luxS) [Escherichia coli strain PV0838]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDTITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=84607 QMG68_RS19895 WP_001130220.1 3765598..3766113(-) (luxS) [Escherichia coli strain PV0838]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACACAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737