Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QRD86_RS16625 Genome accession   NZ_CP128116
Coordinates   3129196..3129840 (-) Length   214 a.a.
NCBI ID   WP_024122680.1    Uniprot ID   A0A9Q6AB41
Organism   Bacillus halotolerans strain KF17     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3124196..3134840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD86_RS16590 (QRD86_16585) - 3125389..3125820 (+) 432 WP_255001771.1 Na(+)/H(+) antiporter subunit B -
  QRD86_RS16595 (QRD86_16590) - 3125820..3126161 (+) 342 WP_024122674.1 Na(+)/H(+) antiporter subunit C -
  QRD86_RS16600 (QRD86_16595) - 3126154..3127635 (+) 1482 WP_151174477.1 Na+/H+ antiporter subunit D -
  QRD86_RS16605 (QRD86_16600) - 3127641..3128117 (+) 477 WP_185848675.1 Na+/H+ antiporter subunit E -
  QRD86_RS16610 (QRD86_16605) - 3128117..3128401 (+) 285 WP_151174478.1 Na(+)/H(+) antiporter subunit F1 -
  QRD86_RS16615 (QRD86_16610) mnhG 3128385..3128759 (+) 375 WP_059292644.1 monovalent cation/H(+) antiporter subunit G -
  QRD86_RS16620 (QRD86_16615) - 3128798..3129178 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  QRD86_RS16625 (QRD86_16620) comA 3129196..3129840 (-) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  QRD86_RS16630 (QRD86_16625) comP 3129921..3132227 (-) 2307 WP_254517859.1 histidine kinase Regulator
  QRD86_RS16635 (QRD86_16630) comX 3132243..3132464 (-) 222 WP_059292642.1 competence pheromone ComX -
  QRD86_RS16640 (QRD86_16635) - 3132461..3133330 (-) 870 WP_101864136.1 polyprenyl synthetase family protein -
  QRD86_RS16645 (QRD86_16640) degQ 3133515..3133655 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  QRD86_RS16650 (QRD86_16645) - 3134116..3134484 (+) 369 WP_106019478.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24109.42 Da        Isoelectric Point: 4.6730

>NTDB_id=846057 QRD86_RS16625 WP_024122680.1 3129196..3129840(-) (comA) [Bacillus halotolerans strain KF17]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=846057 QRD86_RS16625 WP_024122680.1 3129196..3129840(-) (comA) [Bacillus halotolerans strain KF17]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATAGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCCGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986