Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QRD86_RS13740 Genome accession   NZ_CP128116
Coordinates   2581482..2581907 (-) Length   141 a.a.
NCBI ID   WP_095713328.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KF17     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2576482..2586907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD86_RS13710 (QRD86_13705) - 2576721..2576855 (-) 135 WP_010335019.1 hypothetical protein -
  QRD86_RS13715 (QRD86_13710) - 2576933..2577664 (-) 732 WP_101864558.1 SGNH/GDSL hydrolase family protein -
  QRD86_RS13720 (QRD86_13715) - 2577911..2578663 (-) 753 WP_286109039.1 N-acetylmuramoyl-L-alanine amidase -
  QRD86_RS13725 (QRD86_13720) - 2578858..2579484 (+) 627 WP_024122122.1 TVP38/TMEM64 family protein -
  QRD86_RS13730 (QRD86_13725) gnd 2579506..2580399 (-) 894 WP_106020128.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QRD86_RS13735 (QRD86_13730) - 2580720..2581448 (+) 729 WP_106020129.1 hypothetical protein -
  QRD86_RS13740 (QRD86_13735) nucA/comI 2581482..2581907 (-) 426 WP_095713328.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QRD86_RS13745 (QRD86_13740) sigK 2582084..2582812 (+) 729 WP_174754429.1 RNA polymerase sporulation sigma factor SigK -
  QRD86_RS13750 (QRD86_13745) - 2583096..2583332 (-) 237 WP_286109040.1 hypothetical protein -
  QRD86_RS13755 (QRD86_13750) - 2583863..2584420 (-) 558 WP_101861070.1 XRE family transcriptional regulator -
  QRD86_RS13760 (QRD86_13755) wzy 2584564..2585781 (+) 1218 WP_106020130.1 O-antigen polysaccharide polymerase Wzy -
  QRD86_RS13765 (QRD86_13760) - 2585924..2586096 (-) 173 Protein_2563 recombinase family protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15496.62 Da        Isoelectric Point: 5.2217

>NTDB_id=846048 QRD86_RS13740 WP_095713328.1 2581482..2581907(-) (nucA/comI) [Bacillus halotolerans strain KF17]
MKRWMAMLLLAAAVFLGLLGKDMTAPQQVKGAALYDKVLYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTKVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=846048 QRD86_RS13740 WP_095713328.1 2581482..2581907(-) (nucA/comI) [Bacillus halotolerans strain KF17]
ATGAAAAGATGGATGGCAATGCTTCTTCTGGCGGCAGCAGTTTTTCTTGGTTTATTGGGAAAGGATATGACGGCTCCGCA
ACAGGTCAAGGGGGCTGCTTTATATGACAAAGTTTTATATTTTCCGTTGTCTCGTTATCCGGAAACCGGGGATCATATAA
GAGATGCGATTGCCGAAGGACATTCTGATATATGTACAATTGATCGTGATGGAGCGGACAAAAGGCGGGAGGAATCATTA
AAAGGAATTCCGACGAAGCCTGGCTACGATCGGGATGAATGGCCGATGGCAGTTTGTGAAGAAGGAGGTGCCGGAGCCGA
TGTCCGATATGTAACGCCTTCTGATAATCGCGGCGCCGGTTCATGGGTAGGAAATCAAATGAGCAGTTATCCAGATGGCA
CCAAAGTGTTGTTTATTGTTCAGTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.905

89.362

0.553