Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QRD86_RS11170 Genome accession   NZ_CP128116
Coordinates   2135405..2136535 (+) Length   376 a.a.
NCBI ID   WP_188323045.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KF17     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2125637..2137489 2135405..2136535 within 0


Gene organization within MGE regions


Location: 2125637..2137489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD86_RS11065 (QRD86_11065) - 2125637..2126140 (+) 504 WP_106022522.1 DinB family protein -
  QRD86_RS11070 (QRD86_11070) - 2126347..2126580 (+) 234 WP_127696876.1 hypothetical protein -
  QRD86_RS11075 (QRD86_11075) - 2126708..2127220 (-) 513 WP_127696875.1 GNAT family protein -
  QRD86_RS11080 (QRD86_11080) - 2127351..2127486 (-) 136 Protein_2029 DUF6262 family protein -
  QRD86_RS11085 (QRD86_11085) - 2127589..2127747 (-) 159 Protein_2030 N-acetyltransferase -
  QRD86_RS11090 (QRD86_11090) - 2128065..2128802 (-) 738 WP_127696874.1 hypothetical protein -
  QRD86_RS11095 (QRD86_11095) - 2128845..2129145 (-) 301 Protein_2032 hypothetical protein -
  QRD86_RS11100 (QRD86_11100) - 2129146..2129310 (-) 165 WP_127696873.1 hypothetical protein -
  QRD86_RS11105 (QRD86_11105) - 2129358..2129726 (-) 369 WP_106022517.1 hypothetical protein -
  QRD86_RS11110 (QRD86_11110) - 2130270..2130486 (-) 217 Protein_2035 hypothetical protein -
  QRD86_RS11115 (QRD86_11115) - 2130490..2130741 (-) 252 Protein_2036 hypothetical protein -
  QRD86_RS11120 (QRD86_11120) - 2130812..2130991 (+) 180 WP_106022516.1 hypothetical protein -
  QRD86_RS11125 (QRD86_11125) - 2131079..2131702 (-) 624 WP_024571441.1 hypothetical protein -
  QRD86_RS11130 (QRD86_11130) - 2132204..2132434 (+) 231 WP_127696872.1 hypothetical protein -
  QRD86_RS11135 - 2132442..2132501 (-) 60 WP_255004945.1 hypothetical protein -
  QRD86_RS11140 (QRD86_11135) - 2132617..2132763 (-) 147 WP_316961074.1 UPF0715 family protein -
  QRD86_RS11145 (QRD86_11140) - 2133074..2133237 (-) 164 Protein_2042 hypothetical protein -
  QRD86_RS11150 (QRD86_11145) - 2133491..2133967 (-) 477 WP_223257246.1 hypothetical protein -
  QRD86_RS11155 (QRD86_11150) - 2134061..2134294 (-) 234 WP_106021718.1 hypothetical protein -
  QRD86_RS11160 (QRD86_11155) - 2134642..2134902 (+) 261 WP_081638323.1 hypothetical protein -
  QRD86_RS11165 (QRD86_11160) - 2135150..2135320 (+) 171 WP_240312863.1 hypothetical protein -
  QRD86_RS11170 (QRD86_11165) rapC 2135405..2136535 (+) 1131 WP_188323045.1 tetratricopeptide repeat protein Regulator
  QRD86_RS11175 (QRD86_11170) - 2136525..2136668 (+) 144 WP_024121692.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44305.06 Da        Isoelectric Point: 6.1971

>NTDB_id=846031 QRD86_RS11170 WP_188323045.1 2135405..2136535(+) (rapC) [Bacillus halotolerans strain KF17]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEARPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYERDKSDLLPHTLFTLTQIHFKMKDIEKALVLYKKGNEKAKAINDDVLIAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=846031 QRD86_RS11170 WP_188323045.1 2135405..2136535(+) (rapC) [Bacillus halotolerans strain KF17]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGCACGTCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ATGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCCTAAAAGACTCAAAAGCCATAA
ACAAACACAAACTAATTGGTGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCATTGTATGAAAGAGATAAAAGCGATCTCCTCCCTCACACGTTATTTACGCTGACACA
AATTCACTTTAAAATGAAGGATATTGAAAAAGCCTTGGTTCTTTACAAAAAAGGAAACGAGAAAGCAAAAGCAATAAATG
ACGATGTCTTAATTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

44.855

100

0.452