Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRD86_RS08625 Genome accession   NZ_CP128116
Coordinates   1560950..1561228 (+) Length   92 a.a.
NCBI ID   WP_095714714.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KF17     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555950..1566228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD86_RS08605 (QRD86_08605) - 1557141..1558052 (+) 912 WP_101865186.1 ketopantoate reductase family protein -
  QRD86_RS08610 (QRD86_08610) - 1558080..1559312 (-) 1233 WP_106020639.1 aminopeptidase -
  QRD86_RS08615 (QRD86_08615) - 1559426..1559557 (-) 132 WP_024121251.1 protein YkpC -
  QRD86_RS08620 (QRD86_08620) mreBH 1559660..1560667 (-) 1008 WP_024121252.1 cell shape-determining protein MreBH -
  QRD86_RS08625 (QRD86_08625) abrB 1560950..1561228 (+) 279 WP_095714714.1 transcriptional regulator AbhA Regulator
  QRD86_RS08630 (QRD86_08630) kinC 1561419..1562705 (+) 1287 WP_024121254.1 two-component sensor histidine kinase KinC -
  QRD86_RS08635 (QRD86_08635) - 1562721..1563551 (+) 831 WP_106020369.1 gamma-glutamylcyclotransferase -
  QRD86_RS08640 (QRD86_08640) ktrC 1563623..1564288 (+) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  QRD86_RS08645 (QRD86_08645) ade 1564445..1566178 (+) 1734 WP_254518216.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10270.09 Da        Isoelectric Point: 5.8872

>NTDB_id=846026 QRD86_RS08625 WP_095714714.1 1560950..1561228(+) (abrB) [Bacillus halotolerans strain KF17]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVEGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=846026 QRD86_RS08625 WP_095714714.1 1560950..1561228(+) (abrB) [Bacillus halotolerans strain KF17]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCTATTAAAGACAGCATTGAGTTTTTTGTCGAGGGCGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAGTACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGCGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565