Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   QRD86_RS08400 Genome accession   NZ_CP128116
Coordinates   1520243..1520707 (-) Length   154 a.a.
NCBI ID   WP_151174983.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KF17     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515243..1525707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD86_RS08380 (QRD86_08380) kinA 1515706..1517538 (+) 1833 WP_095714840.1 sporulation histidine kinase KinA -
  QRD86_RS08385 (QRD86_08385) - 1517549..1518718 (-) 1170 WP_024121208.1 aminotransferase A -
  QRD86_RS08390 (QRD86_08390) - 1518920..1519081 (-) 162 WP_003238943.1 hypothetical protein -
  QRD86_RS08395 (QRD86_08395) cheV 1519289..1520200 (+) 912 WP_024121210.1 chemotaxis protein CheV -
  QRD86_RS08400 (QRD86_08400) kre 1520243..1520707 (-) 465 WP_151174983.1 YkyB family protein Regulator
  QRD86_RS08405 (QRD86_08405) - 1520833..1522125 (-) 1293 WP_127695343.1 MFS transporter -
  QRD86_RS08410 (QRD86_08410) - 1522201..1522695 (-) 495 WP_081638296.1 L,D-transpeptidase family protein -
  QRD86_RS08415 (QRD86_08415) - 1522753..1523613 (-) 861 WP_127695341.1 metallophosphoesterase -
  QRD86_RS08420 (QRD86_08420) fadH 1523758..1524522 (+) 765 WP_024121215.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17868.73 Da        Isoelectric Point: 10.4658

>NTDB_id=846024 QRD86_RS08400 WP_151174983.1 1520243..1520707(-) (kre) [Bacillus halotolerans strain KF17]
MDDHAYSKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQAYRNPKAQMSLTKAKHLLQKYVGMKEKPLVTNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=846024 QRD86_RS08400 WP_151174983.1 1520243..1520707(-) (kre) [Bacillus halotolerans strain KF17]
ATGGACGACCATGCATACTCGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAGGCGTACCGAAA
TCCAAAAGCTCAAATGTCTTTAACAAAAGCAAAACACCTATTGCAAAAATACGTCGGCATGAAAGAAAAGCCGCTTGTGA
CGAATCGCCAGCAGCCCGCTTATCATAAGCCTGTCTTTAAGAAACTCGGCGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

97.403

100

0.974