Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   QRD86_RS02490 Genome accession   NZ_CP128116
Coordinates   370682..371080 (-) Length   132 a.a.
NCBI ID   WP_188323519.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KF17     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 365682..376080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD86_RS02465 (QRD86_02465) - 366240..367376 (+) 1137 WP_127696008.1 zinc-dependent alcohol dehydrogenase -
  QRD86_RS02470 (QRD86_02470) - 367419..367844 (+) 426 WP_164848148.1 RDD family protein -
  QRD86_RS02475 (QRD86_02475) - 367926..368261 (+) 336 WP_099043679.1 YckD family protein -
  QRD86_RS02480 (QRD86_02480) - 368413..369141 (+) 729 WP_188323518.1 AAA family ATPase -
  QRD86_RS02485 (QRD86_02485) - 369214..370647 (+) 1434 WP_101860166.1 family 1 glycosylhydrolase -
  QRD86_RS02490 (QRD86_02490) nin/comJ 370682..371080 (-) 399 WP_188323519.1 competence protein ComJ Regulator
  QRD86_RS02495 (QRD86_02495) nucA/comI 371107..371544 (-) 438 WP_024120178.1 DNA-entry nuclease Machinery gene
  QRD86_RS02500 (QRD86_02500) tlpC 371742..373454 (-) 1713 WP_095714427.1 methyl-accepting chemotaxis protein TlpC -
  QRD86_RS02505 (QRD86_02505) hxlB 373567..374124 (-) 558 WP_101863966.1 6-phospho-3-hexuloisomerase -
  QRD86_RS02510 (QRD86_02510) hxlA 374130..374762 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  QRD86_RS02515 (QRD86_02515) hxlR 374994..375356 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14972.93 Da        Isoelectric Point: 4.6250

>NTDB_id=846000 QRD86_RS02490 WP_188323519.1 370682..371080(-) (nin/comJ) [Bacillus halotolerans strain KF17]
MIKSWKPQELTISYHQFTVFQKGSAPPVIDWTDEAIEKGYAEADEAISFEAQRNSKVYILLRLNSSETVASYEKKVTVPF
HVTKDGIEIESIMSKRLSFDLPKGDYQFTCYTVPAELSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=846000 QRD86_RS02490 WP_188323519.1 370682..371080(-) (nin/comJ) [Bacillus halotolerans strain KF17]
TTGATCAAATCATGGAAGCCGCAAGAACTGACGATTTCATATCATCAATTTACTGTATTTCAAAAGGGTTCCGCACCGCC
AGTCATCGATTGGACAGATGAAGCAATTGAAAAAGGATATGCGGAAGCGGACGAAGCCATTTCGTTTGAGGCACAGCGAA
ATTCAAAGGTATATATTCTTTTGCGACTTAACAGTTCAGAAACAGTTGCATCCTACGAAAAAAAAGTGACTGTTCCTTTT
CACGTCACAAAAGACGGAATTGAAATTGAAAGCATCATGTCCAAGAGGCTGTCCTTTGACCTTCCTAAAGGAGACTATCA
ATTCACATGCTACACTGTGCCGGCTGAGCTGTCAGATCTGCACGCTGACACTTATATCATTGATGCTGTTTCCGTATAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

87.121

100

0.871