Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QRD88_RS08710 Genome accession   NZ_CP128114
Coordinates   1711804..1712184 (+) Length   126 a.a.
NCBI ID   WP_249117534.1    Uniprot ID   -
Organism   Bacillus safensis strain G6S3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1706804..1717184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS08700 (QRD88_08695) - 1707300..1710443 (+) 3144 WP_212051918.1 cytochrome P450 -
  QRD88_RS08705 (QRD88_08700) - 1710637..1711545 (+) 909 WP_024425124.1 trypsin-like serine protease -
  QRD88_RS08710 (QRD88_08705) nucA/comI 1711804..1712184 (+) 381 WP_249117534.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QRD88_RS08715 (QRD88_08710) - 1712330..1713178 (+) 849 WP_024427077.1 STAS domain-containing protein -
  QRD88_RS08720 (QRD88_08715) - 1713211..1713753 (-) 543 WP_024425127.1 IseA DL-endopeptidase inhibitor family protein -
  QRD88_RS08725 (QRD88_08720) - 1714050..1714496 (+) 447 WP_024425128.1 hypothetical protein -
  QRD88_RS08730 (QRD88_08725) lexA 1714541..1715161 (-) 621 WP_024425129.1 transcriptional repressor LexA -
  QRD88_RS08735 (QRD88_08730) yneA 1715320..1715631 (+) 312 WP_041117521.1 cell division suppressor protein YneA -
  QRD88_RS08740 (QRD88_08735) - 1715649..1716296 (+) 648 WP_025093247.1 recombinase family protein -
  QRD88_RS08745 (QRD88_08740) - 1716366..1716596 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13777.43 Da        Isoelectric Point: 8.4927

>NTDB_id=845963 QRD88_RS08710 WP_249117534.1 1711804..1712184(+) (nucA/comI) [Bacillus safensis strain G6S3]
MGTLFGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=845963 QRD88_RS08710 WP_249117534.1 1711804..1712184(+) (nucA/comI) [Bacillus safensis strain G6S3]
ATGGGCACGTTGTTTGGCGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCA
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGGGCAGGCTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556