Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRD88_RS07020 Genome accession   NZ_CP128114
Coordinates   1368287..1368565 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain G6S3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1363287..1373565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS06995 (QRD88_06990) - 1363380..1363655 (-) 276 WP_024424743.1 hypothetical protein -
  QRD88_RS07000 (QRD88_06995) - 1363799..1365418 (+) 1620 WP_024426884.1 ATP-binding cassette domain-containing protein -
  QRD88_RS07005 (QRD88_07000) - 1365457..1366689 (-) 1233 WP_286099080.1 aminopeptidase -
  QRD88_RS07010 (QRD88_07005) - 1366797..1366928 (-) 132 WP_008356975.1 protein YkpC -
  QRD88_RS07015 (QRD88_07010) mreBH 1367003..1368010 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  QRD88_RS07020 (QRD88_07015) abrB 1368287..1368565 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRD88_RS07025 (QRD88_07020) - 1368711..1370021 (+) 1311 WP_212052077.1 ATP-binding protein -
  QRD88_RS07030 (QRD88_07025) - 1370026..1370862 (+) 837 WP_212052075.1 gamma-glutamylcyclotransferase family protein -
  QRD88_RS07035 (QRD88_07030) - 1370900..1371568 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  QRD88_RS07040 (QRD88_07035) ade 1371831..1373558 (+) 1728 WP_212052066.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=845958 QRD88_RS07020 WP_024424746.1 1368287..1368565(+) (abrB) [Bacillus safensis strain G6S3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=845958 QRD88_RS07020 WP_024424746.1 1368287..1368565(+) (abrB) [Bacillus safensis strain G6S3]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543