Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QRD88_RS06910 Genome accession   NZ_CP128114
Coordinates   1348323..1348895 (+) Length   190 a.a.
NCBI ID   WP_025092353.1    Uniprot ID   A0A5C0WCR7
Organism   Bacillus safensis strain G6S3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343323..1353895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS06880 (QRD88_06875) dapD 1343440..1344150 (+) 711 WP_008347987.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  QRD88_RS06885 (QRD88_06880) - 1344233..1345363 (+) 1131 WP_197172805.1 N-acetyldiaminopimelate deacetylase -
  QRD88_RS06890 (QRD88_06885) - 1345414..1345656 (+) 243 WP_024424725.1 YkuS family protein -
  QRD88_RS06895 (QRD88_06890) - 1345679..1346488 (-) 810 WP_024424726.1 mechanosensitive ion channel family protein -
  QRD88_RS06900 (QRD88_06895) ahpA 1346760..1347302 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  QRD88_RS06905 (QRD88_06900) - 1347385..1347843 (+) 459 WP_024424727.1 TlpA disulfide reductase family protein -
  QRD88_RS06910 (QRD88_06905) rok 1348323..1348895 (+) 573 WP_025092353.1 transcriptional regulator Rok Regulator
  QRD88_RS06915 (QRD88_06910) - 1348943..1349860 (-) 918 WP_286099075.1 sigmaE regulated sporulation protein -
  QRD88_RS06920 (QRD88_06915) - 1349946..1350527 (+) 582 WP_286099076.1 molybdenum cofactor guanylyltransferase -
  QRD88_RS06925 (QRD88_06920) - 1350558..1351574 (+) 1017 WP_034623325.1 ThiF family adenylyltransferase -
  QRD88_RS06930 (QRD88_06925) glp 1351584..1352861 (+) 1278 WP_286099077.1 gephyrin-like molybdotransferase Glp -
  QRD88_RS06935 (QRD88_06930) mobB 1352843..1353367 (+) 525 WP_024424784.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  QRD88_RS06940 (QRD88_06935) - 1353364..1353855 (+) 492 WP_056766335.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21547.49 Da        Isoelectric Point: 9.7309

>NTDB_id=845957 QRD88_RS06910 WP_025092353.1 1348323..1348895(+) (rok) [Bacillus safensis strain G6S3]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQQ
PAQTQSSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTF
MQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 573 bp        

>NTDB_id=845957 QRD88_RS06910 WP_025092353.1 1348323..1348895(+) (rok) [Bacillus safensis strain G6S3]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAACGAGGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTACGTACAGAGAGAAAGACGGATTCACTGCCTGTATTAGCTGAGCTTGCTGCGCAAGAAATGAGAAGCTACCAGCAG
CCGGCACAAACACAATCATCATCTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGGATCGACAAG
ACGCAGAAGAGGCACAGCTCGTCCTGGCTCTAAGGCAGCGAAGCTTCGTGAAGCTGCGATTAAAACGTTAAAACGTCATA
ATGCAGCGATTAAAAGCTCAGAGCTTCAAAAAGAGATCGAAAAAGAGAGCGGTCTTGAAATCCCAAATATGACAACGTTT
ATGCAAAGCTTAATTAAAATGTACCCTGAAGTGAAGAAGCCTTATCGCGGACAGTATATTTTAGAAGGCGACATTCAAAC
AGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WCR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.283

98.421

0.8