Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QRD88_RS01950 Genome accession   NZ_CP128114
Coordinates   359690..360118 (-) Length   142 a.a.
NCBI ID   WP_024424305.1    Uniprot ID   A0A5C0WGQ8
Organism   Bacillus safensis strain G6S3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 354690..365118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS01920 (QRD88_01920) - 354851..355180 (+) 330 WP_024424311.1 YckD family protein -
  QRD88_RS01925 (QRD88_01925) - 355226..355990 (-) 765 WP_103132585.1 MBL fold metallo-hydrolase -
  QRD88_RS01930 (QRD88_01930) - 356106..356522 (+) 417 WP_025092811.1 Lrp/AsnC family transcriptional regulator -
  QRD88_RS01935 (QRD88_01935) - 356551..357357 (+) 807 WP_103132584.1 AAC(3) family N-acetyltransferase -
  QRD88_RS01940 (QRD88_01940) - 357359..357745 (-) 387 WP_024427268.1 competence protein ComJ -
  QRD88_RS01945 (QRD88_01945) - 357865..359562 (-) 1698 WP_286098902.1 methyl-accepting chemotaxis protein -
  QRD88_RS01950 (QRD88_01950) nucA/comI 359690..360118 (-) 429 WP_024424305.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QRD88_RS01955 (QRD88_01955) - 360486..362555 (+) 2070 WP_024424303.1 hydantoinase/oxoprolinase family protein -
  QRD88_RS01960 (QRD88_01960) - 362545..364533 (+) 1989 WP_024424302.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15971.96 Da        Isoelectric Point: 6.2215

>NTDB_id=845938 QRD88_RS01950 WP_024424305.1 359690..360118(-) (nucA/comI) [Bacillus safensis strain G6S3]
MKLLKMILLLLLIVIGVATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDRS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=845938 QRD88_RS01950 WP_024424305.1 359690..360118(-) (nucA/comI) [Bacillus safensis strain G6S3]
ATGAAACTTCTTAAAATGATTCTCTTGCTTTTATTGATTGTTATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACGATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCATCCATTTGTACAATTGACCGTAAACATAGTGATGAGCAGAGGGATCGATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGTGACGAATGGCCAATGGCAATGTGCAAAGAAGGAGGCACAGGAGC
TTCTGTCAAATATGTACGCCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATTCAATTTATCATTGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WGQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.667

80.282

0.535