Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRD88_RS00290 Genome accession   NZ_CP128114
Coordinates   47352..47642 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain G6S3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42352..52642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS00250 (QRD88_00250) - 42384..42713 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  QRD88_RS00255 (QRD88_00255) - 42726..43166 (+) 441 WP_024425626.1 YaaR family protein -
  QRD88_RS00260 (QRD88_00260) holB 43178..44167 (+) 990 WP_024425627.1 DNA polymerase III subunit delta' -
  QRD88_RS00265 (QRD88_00265) - 44170..44997 (+) 828 WP_024425628.1 stage 0 sporulation family protein -
  QRD88_RS00270 (QRD88_00270) yabA 45012..45365 (+) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  QRD88_RS00275 (QRD88_00275) - 45421..46164 (+) 744 WP_024427205.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QRD88_RS00280 (QRD88_00280) - 46151..46450 (+) 300 WP_024425631.1 GIY-YIG nuclease family protein -
  QRD88_RS00285 (QRD88_00285) rsmI 46425..47306 (+) 882 WP_024425632.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QRD88_RS00290 (QRD88_00290) abrB 47352..47642 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRD88_RS00295 (QRD88_00295) metG 48163..50163 (+) 2001 WP_197172571.1 methionine--tRNA ligase -
  QRD88_RS00300 (QRD88_00300) - 50245..51012 (+) 768 WP_024425634.1 TatD family hydrolase -
  QRD88_RS00305 (QRD88_00305) - 51257..52459 (+) 1203 WP_212053038.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=845935 QRD88_RS00290 WP_087975202.1 47352..47642(-) (abrB) [Bacillus safensis strain G6S3]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=845935 QRD88_RS00290 WP_087975202.1 47352..47642(-) (abrB) [Bacillus safensis strain G6S3]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCTTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938