Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QRX95_RS25755 Genome accession   NZ_CP128112
Coordinates   4993431..4994780 (-) Length   449 a.a.
NCBI ID   WP_033710235.1    Uniprot ID   -
Organism   Bacillus mycoides strain G5S2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4988431..4999780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX95_RS25730 (QRX95_25730) - 4989978..4990909 (-) 932 Protein_4988 YafY family protein -
  QRX95_RS25735 (QRX95_25735) - 4990992..4991435 (+) 444 WP_002016134.1 VOC family protein -
  QRX95_RS25740 (QRX95_25740) raiA 4991540..4992082 (-) 543 WP_002016135.1 ribosome-associated translation inhibitor RaiA -
  QRX95_RS25745 (QRX95_25745) cspC 4992403..4992600 (-) 198 WP_001990088.1 cold shock protein CspC -
  QRX95_RS25750 (QRX95_25750) - 4992727..4993431 (-) 705 WP_002166458.1 ComF family protein -
  QRX95_RS25755 (QRX95_25755) comFA 4993431..4994780 (-) 1350 WP_033710235.1 ATP-dependent helicase ComFA Machinery gene
  QRX95_RS25760 (QRX95_25760) - 4994911..4996363 (-) 1453 Protein_4994 NlpC/P60 family protein -
  QRX95_RS25765 (QRX95_25765) - 4996496..4996810 (-) 315 WP_002089608.1 helix-turn-helix domain-containing protein -
  QRX95_RS25770 (QRX95_25770) - 4996973..4997815 (-) 843 WP_002016143.1 DegV family protein -
  QRX95_RS25775 (QRX95_25775) - 4998054..4998689 (+) 636 WP_002034752.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50956.23 Da        Isoelectric Point: 9.0407

>NTDB_id=845926 QRX95_RS25755 WP_033710235.1 4993431..4994780(-) (comFA) [Bacillus mycoides strain G5S2]
MLAGRQLLLEELSSDLQDKLAHLKRNRDVVCVQGVIRKSSKYMCQRCGNIEQRLFASLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGILSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLHYAVNEAM
KEEAARIYLTATPDENWKRKLRNGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLMRKKIPRVLLQWLNMYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVENLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=845926 QRX95_RS25755 WP_033710235.1 4993431..4994780(-) (comFA) [Bacillus mycoides strain G5S2]
ATGTTAGCTGGTAGACAGTTACTGTTAGAAGAACTCTCTTCAGATTTGCAGGATAAATTGGCTCATCTGAAAAGGAATCG
AGACGTGGTTTGTGTACAAGGGGTAATTAGGAAGTCTTCAAAATATATGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGCATCATTGCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTACGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCATTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCATTATGCAGTAAACGAAGCGATG
AAGGAGGAGGCTGCACGTATTTATTTAACTGCAACTCCAGATGAAAATTGGAAGCGTAAATTGCGGAATGGTAAGCAAAA
AGGGGTTATTATTTCAGGACGTTATCATCGTCATCCATTGCCAGTCCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATGCGTAAAAAAATTCCTCGTGTTTTATTACAATGGTTAAATATGTACTTATCTAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AACGAGGAGTAACTGTTGAAAATTTACAAGTTGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAAGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.34

98.218

0.494
  comFA Latilactobacillus sakei subsp. sakei 23K

40.955

88.641

0.363