Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QRD87_RS12535 Genome accession   NZ_CP128109
Coordinates   2393868..2394638 (-) Length   256 a.a.
NCBI ID   WP_008342406.1    Uniprot ID   A0A9X0FVJ5
Organism   Bacillus altitudinis strain D9_B_49     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2388868..2399638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS12515 (QRD87_12515) - 2388961..2389782 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  QRD87_RS12520 (QRD87_12520) - 2389808..2390446 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  QRD87_RS12525 (QRD87_12525) glyS 2390613..2392658 (-) 2046 WP_017367621.1 glycine--tRNA ligase subunit beta -
  QRD87_RS12530 (QRD87_12530) glyQ 2392651..2393538 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  QRD87_RS12535 (QRD87_12535) recO 2393868..2394638 (-) 771 WP_008342406.1 DNA repair protein RecO Machinery gene
  QRD87_RS12540 (QRD87_12540) - 2394674..2394817 (-) 144 WP_008342408.1 YqzL family protein -
  QRD87_RS12545 (QRD87_12545) era 2394965..2395870 (-) 906 WP_007501305.1 GTPase Era -
  QRD87_RS12550 (QRD87_12550) - 2395863..2396261 (-) 399 WP_008342410.1 cytidine deaminase -
  QRD87_RS12555 (QRD87_12555) - 2396374..2396760 (-) 387 WP_286108399.1 diacylglycerol kinase family protein -
  QRD87_RS12560 (QRD87_12560) ybeY 2396738..2397217 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  QRD87_RS12565 (QRD87_12565) - 2397218..2399305 (-) 2088 WP_193751549.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29317.03 Da        Isoelectric Point: 8.4335

>NTDB_id=845857 QRD87_RS12535 WP_008342406.1 2393868..2394638(-) (recO) [Bacillus altitudinis strain D9_B_49]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICKQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=845857 QRD87_RS12535 WP_008342406.1 2393868..2394638(-) (recO) [Bacillus altitudinis strain D9_B_49]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGGGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGGACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAAGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCACTTCTCAATTAGAGATAACGGATTCATCTGTAAGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758