Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QRD87_RS11025 Genome accession   NZ_CP128109
Coordinates   2124944..2125579 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain D9_B_49     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2119944..2130579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS10985 (QRD87_10985) - 2120108..2121226 (+) 1119 WP_237562534.1 NADH-dependent flavin oxidoreductase -
  QRD87_RS10990 (QRD87_10990) - 2121276..2121782 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  QRD87_RS10995 (QRD87_10995) - 2121951..2122370 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  QRD87_RS11000 (QRD87_11000) - 2122392..2122844 (-) 453 WP_017359729.1 YppG family protein -
  QRD87_RS11005 (QRD87_11005) - 2122953..2123333 (-) 381 WP_234710322.1 YppE family protein -
  QRD87_RS11010 (QRD87_11010) - 2123383..2123616 (-) 234 WP_224558417.1 DUF5446 family protein -
  QRD87_RS11015 (QRD87_11015) sspM 2123813..2123917 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  QRD87_RS11020 (QRD87_11020) - 2123941..2124897 (-) 957 WP_045034305.1 DUF2515 domain-containing protein -
  QRD87_RS11025 (QRD87_11025) recU 2124944..2125579 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  QRD87_RS11030 (QRD87_11030) - 2125599..2128271 (+) 2673 WP_286108376.1 PBP1A family penicillin-binding protein -
  QRD87_RS11035 (QRD87_11035) - 2128307..2128816 (-) 510 WP_045034307.1 YpoC family protein -
  QRD87_RS11040 (QRD87_11040) nth 2128813..2129475 (-) 663 WP_008344602.1 endonuclease III -
  QRD87_RS11045 (QRD87_11045) - 2129493..2130197 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=845851 QRD87_RS11025 WP_017359733.1 2124944..2125579(+) (recU) [Bacillus altitudinis strain D9_B_49]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=845851 QRD87_RS11025 WP_017359733.1 2124944..2125579(+) (recU) [Bacillus altitudinis strain D9_B_49]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAATGGGGTATATAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697