Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QRD87_RS09815 Genome accession   NZ_CP128109
Coordinates   1879834..1880214 (-) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain D9_B_49     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1874834..1885214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS09780 (QRD87_09780) - 1875424..1875654 (-) 231 WP_008343816.1 DUF896 domain-containing protein -
  QRD87_RS09785 (QRD87_09785) - 1875724..1876371 (-) 648 WP_041507218.1 recombinase family protein -
  QRD87_RS09790 (QRD87_09790) yneA 1876389..1876700 (-) 312 WP_007499348.1 cell division suppressor protein YneA -
  QRD87_RS09795 (QRD87_09795) lexA 1876860..1877480 (+) 621 WP_007499350.1 transcriptional repressor LexA -
  QRD87_RS09800 (QRD87_09800) - 1877528..1877971 (-) 444 WP_041507219.1 hypothetical protein -
  QRD87_RS09805 (QRD87_09805) - 1878267..1878809 (+) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  QRD87_RS09810 (QRD87_09810) - 1878842..1879690 (-) 849 WP_017359585.1 STAS domain-containing protein -
  QRD87_RS09815 (QRD87_09815) nucA/comI 1879834..1880214 (-) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QRD87_RS09820 (QRD87_09820) - 1880442..1882436 (-) 1995 WP_061419186.1 glycosyltransferase family 39 protein -
  QRD87_RS09825 (QRD87_09825) - 1882583..1883491 (-) 909 WP_061419183.1 trypsin-like serine protease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=845850 QRD87_RS09815 WP_224559893.1 1879834..1880214(-) (nucA/comI) [Bacillus altitudinis strain D9_B_49]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=845850 QRD87_RS09815 WP_224559893.1 1879834..1880214(-) (nucA/comI) [Bacillus altitudinis strain D9_B_49]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCAAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556