Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QRD87_RS05690 Genome accession   NZ_CP128109
Coordinates   1098045..1098623 (+) Length   192 a.a.
NCBI ID   WP_286108805.1    Uniprot ID   -
Organism   Bacillus altitudinis strain D9_B_49     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093045..1103623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS05670 (QRD87_05670) - 1093538..1094833 (-) 1296 WP_007497200.1 globin-coupled sensor protein -
  QRD87_RS05675 (QRD87_05675) - 1094925..1096457 (-) 1533 WP_125589117.1 FAD-dependent oxidoreductase -
  QRD87_RS05680 (QRD87_05680) - 1096600..1097460 (+) 861 WP_017366957.1 SDR family oxidoreductase -
  QRD87_RS05685 (QRD87_05685) - 1097519..1097755 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  QRD87_RS05690 (QRD87_05690) comK 1098045..1098623 (+) 579 WP_286108805.1 competence protein ComK Regulator
  QRD87_RS05695 (QRD87_05695) - 1098767..1099873 (+) 1107 WP_286108806.1 D-TA family PLP-dependent enzyme -
  QRD87_RS05700 (QRD87_05700) - 1100260..1100742 (+) 483 WP_073415935.1 hypothetical protein -
  QRD87_RS05705 (QRD87_05705) - 1100774..1102213 (-) 1440 WP_286108807.1 PLP-dependent aminotransferase family protein -
  QRD87_RS05710 (QRD87_05710) - 1102356..1103525 (+) 1170 WP_286108808.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22377.35 Da        Isoelectric Point: 8.8031

>NTDB_id=845830 QRD87_RS05690 WP_286108805.1 1098045..1098623(+) (comK) [Bacillus altitudinis strain D9_B_49]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSRVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHNFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=845830 QRD87_RS05690 WP_286108805.1 1098045..1098623(+) (comK) [Bacillus altitudinis strain D9_B_49]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGTGTATATTCAAGAGTGATCGAAAGAGAGACAAGCTTTTATGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATAACTTTCAGGAATCATCCCTCGGAGATACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.609