Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QRD87_RS02515 Genome accession   NZ_CP128109
Coordinates   445711..446139 (-) Length   142 a.a.
NCBI ID   WP_058336347.1    Uniprot ID   -
Organism   Bacillus altitudinis strain D9_B_49     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 440711..451139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS02485 (QRD87_02485) - 440856..441185 (+) 330 WP_017366586.1 YckD family protein -
  QRD87_RS02490 (QRD87_02490) - 441232..441996 (-) 765 WP_268383545.1 MBL fold metallo-hydrolase -
  QRD87_RS02495 (QRD87_02495) - 442112..442531 (+) 420 WP_024718958.1 Lrp/AsnC family transcriptional regulator -
  QRD87_RS02500 (QRD87_02500) - 442556..443362 (+) 807 WP_058336346.1 AAC(3) family N-acetyltransferase -
  QRD87_RS02505 (QRD87_02505) comJ 443364..443750 (-) 387 WP_039166300.1 competence protein ComJ -
  QRD87_RS02510 (QRD87_02510) - 443887..445584 (-) 1698 WP_178929519.1 methyl-accepting chemotaxis protein -
  QRD87_RS02515 (QRD87_02515) nucA/comI 445711..446139 (-) 429 WP_058336347.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QRD87_RS02520 (QRD87_02520) - 446507..448576 (+) 2070 WP_268383549.1 hydantoinase/oxoprolinase family protein -
  QRD87_RS02525 (QRD87_02525) - 448566..450551 (+) 1986 WP_268383551.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15912.88 Da        Isoelectric Point: 6.4881

>NTDB_id=845824 QRD87_RS02515 WP_058336347.1 445711..446139(-) (nucA/comI) [Bacillus altitudinis strain D9_B_49]
MKLLKTILLLLLIVIGVATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=845824 QRD87_RS02515 WP_058336347.1 445711..446139(-) (nucA/comI) [Bacillus altitudinis strain D9_B_49]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTGTAGCAACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGTTATCCAGAAACTGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGGAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514